Re: [galaxy-dev] Error in creating admin user during tool shed bootstrap

not compatible with postgres? Want to try >> sqlite instead - should be fine for testing? >> >> -John >> >> >> On Mon, Nov 10, 2014 at 3:42 PM, Bruno Grande wrote: >> > I had the brilliant idea of sending the previous email out on a Friday >> &

Re: [galaxy-dev] Error in creating admin user during tool shed bootstrap

I had the brilliant idea of sending the previous email out on a Friday afternoon/evening. I'm just following up with this thread. Best regards, Bruno -- Bruno Grande, B.Sc. (Hons) M.Sc. Candidate Dr. Ryan Morin's Laboratory Molecular Biology and Biochemistry, Simon Fraser

[galaxy-dev] Error in creating admin user during tool shed bootstrap

I'm setting up a local development Tool Shed according to Greg Von Kuster's blog post . During the bootstrapping process, it seems that the creation of the admin user based on the information in user_info.xml fails because of a SQLAlch

[galaxy-dev] Unable to add R package dependency to tool_dependencies.xml

I'm attempting to create a tool dependency definition file for ExomeCNV, which notably depends on R (I'm trying to use the package_r_3_1_1 repository). However, I can't seem to set up the dependency properly. See attached for my tool_dependencies.xml. Also, see here for the erro

Re: [galaxy-dev] Can't change working directory during tool dependency installation

se you might just find yourself back in the temp installation > directory after each separate action > > > Ross Lazarus > Head, Computational Biology, Baker IDI, Melbourne, Australia > Pubs: http://scholar.google.com/citations?hl=en&user=UCUuEM4J > > > On Sat, Oct

[galaxy-dev] Can't change working directory during tool dependency installation

I originally posted this question on the Galaxy Biostars, but later realized that galaxy-dev is probably more appropriate. So, here it goes. I'm trying to automate the installation of a tool's dependency with a tool dependency definition repository. During t