[galaxy-dev] tools fails only in workflow

2014-02-04 Thread Christian Hundsrucker
Dear all, I developed a tool which allows an optional selection as input amongst others. It works quite neat if I run it via Analyse Data. Actually, it only breaks in one condition: If I try to run it as a Workflow and set the multiple selection input to be set at runtime AND do not select

Re: [galaxy-dev] error with unicode output

2013-12-06 Thread Christian Hundsrucker
:04 AM, Christian Hundsrucker christian.hundsruc...@fmi.ch wrote: Hi David, hi all! I have a similar/the same issue in another setting... galaxy/galaxy_dist/lib/galaxy/jobs/runners/local.py, line 116, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) [...] galaxy/galaxy_dist/eggs

Re: [galaxy-dev] error with unicode output

2013-12-05 Thread Christian Hundsrucker
Hi David, hi all! I have a similar/the same issue in another setting... galaxy/galaxy_dist/lib/galaxy/jobs/runners/local.py, line 116, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) [...]

[galaxy-dev] provide group(s) association as a tool parameter

2013-07-16 Thread Christian Hundsrucker
Hi there! Is there an easy way to pass a users group associations to a tool as a parameter. Maybe similar to pass user information via the reserved variable $__user_email__ ?! I tried $__app__.model.UserGroupAssociation.group however I end up with a mapper-object and are kind of stuck

Re: [galaxy-dev] location of .loc-files/data tables -- bug or feature?

2013-05-22 Thread Christian Hundsrucker
right away, we'll have another full-fledged dist release out soon. -Dannon On Tue, May 21, 2013 at 5:48 AM, Christian Hundsrucker christian.hundsruc...@ur.de mailto:christian.hundsruc...@ur.de wrote: Hello, Galaxy developers! I do a bit of tweaking to a local galaxy instance. Thus

[galaxy-dev] location of .loc-files/data tables -- bug or feature?

2013-05-21 Thread Christian Hundsrucker
Hello, Galaxy developers! I do a bit of tweaking to a local galaxy instance. Thus, I just realized that subdirectories are not supported for the location of .loc-files/data tables. E.g. tool-data/somesub/my.loc is not recognized even if this location is correctly linked in the