Cool idea. I am very interested in it. One question: how could we attend
the conference since we all at different place?
Cheers,
Tyler
On Fri, Apr 27, 2012 at 12:33 PM, Mohammad Heydarian wrote:
> Great idea. In!
>
> Cheers,
> Mo Heydarian
>
> PhD candidate
> The Johns Hopkins School of Medicine
Dear all,
I installed and uninstalled some shed tools for my Galaxy instance. And I
have found some weird things which I don't think they are as expected.
1. After I installed a shed tool using the Galaxy web UI and the tool can
run successfully, I didn't find any change of the "shed_tool_conf.x
Thank you Peter. I changed the dataset and succeeded this time. Appreciated
for you help.
Cheers,
Tyler
On Thu, Apr 19, 2012 at 12:40 PM, Peter Cock wrote:
> On Thu, Apr 19, 2012 at 7:13 PM, JIE CHEN
> wrote:
> > Hi Peter,
> >
> > Here is the full log:
> >
>
&g
s=0
-OUT:rrot=1:rtd=1
Thanks,
Tyler
On Thu, Apr 19, 2012 at 10:48 AM, Peter Cock wrote:
> On Thu, Apr 19, 2012 at 6:35 PM, JIE CHEN
> wrote:
> > Hi Peter,
> >
> > Thank you for your patience. I checked the error message in the history.
> > They all give exactly the
a wrappers using the Galaxy web UI and checked that the
mira.py and mira.xml is under one of the directoriesof the shed_tools
directory.
2. installed the mira 3.4.0 binaries in my host
Thanks a lot.
Tyler
On Thu, Apr 19, 2012 at 2:11 AM, Peter Cock wrote:
> On Thu, Apr 19, 2012 at 12:40
Of course. I deleted lots of times. But be careful if some of the files are
important. Once you deleted them, all the files will disappear from the
user's history(or when you open them, you will run into errors). You should
know the files you are deleting.
On Wed, Apr 18, 2012 at 8:40 PM, diana mi
The version I installed is : mira_3.4.0_prod_linux-gnu_x86_64_static
On Wed, Apr 18, 2012 at 3:31 PM, Peter Cock wrote:
> On Wed, Apr 18, 2012 at 11:21 PM, JIE CHEN
> wrote:
> > Dear all,
> >
> > I just installed Mira-Assembler via Galaxy tool sheds. As expected, it
>
Dear all,
I just installed Mira-Assembler via Galaxy tool sheds. As expected, it
downloaded the wrappers into the "shed-tools" directory. Then I downloaded
and installed Mira binaries on the system and add it to $PATH. Right now,
mira can run successfully in the command line prompt. However when i
On Tue, Apr 17, 2012 at 1:00 PM, JIE CHEN wrote:
> Thank you Nate. Your advise is very helpful to me. I installed the
> binaries like you said. Right now the binaries can be run successfully in
> the command line prompt. However i run into other problems :
>
> Failed to open inpu
Dear all,
I was trying to run the build-in function "Fetch taxonomic representation"
on my local instance of Galaxy, however it doesn't work as I expect.
The error message is:
/bin/sh: taxBuilder: not found
Anyone has seen this problem before? Please tell me what to do to solve
this problem?
Dear all,
I installed a local Galaxy instance for my company. Different from the
regular setting, we want to restrict the access of our local Galaxy
instance only to the people in our company, which means it is not open to
public. After new configuration, to use the service provided by our Galaxy
Dear all,
I followed the instructions under the link
http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy to set up a Apache
proxy to Galaxy.
I have done with the section of basic configuration and it works very well.
However when I move to the next section: external user authentication, I
found
Dear all,
I have spent several days trying to make "get microbial data" to work in my
local Galaxy instance, but failed.
What i did is:
1. cd /galaxy-dist/tool-data/
2. nano microbial_data
3. uncomment the lines starting with "ORG", "CHR" or "DATA"
After that, i restarted Galaxy and can see the
Hello everyone,
I'm a new to Galaxy and the tool sheds. Right now i am learning it by
reading the tutorial and have a problem:
when i try to start my local tool shed by typing the command "%sh
run_community.sh" within the galaxy installation directory, nothing
happens. It just terminate itself im
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