Re: [galaxy-dev] Fw: No peek issue and datasets wrongly reported as Empty

2013-11-08 Thread Jean-Francois Payotte
issue when updating to the November distribution. :) Thanks, Jean-François From: Nate Coraor n...@bx.psu.edu To: Jean-Francois Payotte jean-francois.payo...@dnalandmarks.ca Cc: galaxy-dev@lists.bx.psu.edu Date: 08/11/2013 09:40 AM Subject:Re: [galaxy-dev] Fw: No peek issue

[galaxy-dev] Job execution order mixed-up

2013-11-07 Thread Jean-Francois Payotte
Dear Galaxy mailing-list, Once again I come seeking for your help. I hope someone already had this issue or will have an idea on where to look to solve it. :) One of our users reported having workflows failing because some steps were executed before all their inputs where ready. You can find a

Re: [galaxy-dev] Strange issue where the dataset reported in the bug report doesn't correspond to the current dataset

2013-05-07 Thread Jean-Francois Payotte
Hi Carl, John, Do you know if there has been any improvements regarding this issue? As far as I know, the provided patch seemed to do the trick, although it complicated the update to the latest Galaxy distribution a little bit (not that much though). I'm asking if there has been any finding on

Re: [galaxy-dev] Any hint on how to use Galaxy within virtualenv?

2013-05-06 Thread Jean-Francois Payotte
can find a couple minutes to test it, I will let you know the results. Thank you for your follow-up. :) Jean-Francois From: Dannon Baker dannon.ba...@gmail.com To: Jean-Francois Payotte jean-francois.payo...@dnalandmarks.ca Cc: Galaxy Dev galaxy-dev@lists.bx.psu.edu Date: 29/04/2013

Re: [galaxy-dev] Any hint on how to use Galaxy within virtualenv?

2013-04-20 Thread Jean-Francois Payotte
you for your help! This is much appreciated! Jean-Francois From: Dannon Baker dannon.ba...@gmail.com To: Jean-Francois Payotte jean-francois.payo...@dnalandmarks.ca Cc: Galaxy Dev galaxy-dev@lists.bx.psu.edu Date: 19/04/2013 06:47 PM Subject:Re: [galaxy-dev] Any hint on how

Re: [galaxy-dev] Strange issue where the dataset reported in the bug report doesn't correspond to the current dataset

2013-03-12 Thread Jean-Francois Payotte
Hi Carl, We are using a mysql database backend as well. Thank you for your help and do not hesitate if I can sen you any other useful information about our local Galaxy instance. Thanks, Jean-Francois From: Carl Eberhard carlfeberh...@gmail.com To: Jean-Francois Payotte jean

Re: [galaxy-dev] Strange issue where the dataset reported in the bug report doesn't correspond to the current dataset

2013-03-11 Thread Jean-Francois Payotte
the file? (That's what I did.) Thanks again for your help! This is greatly appreciated! Jean-Francois From: Carl Eberhard carlfeberh...@gmail.com To: John Chilton chil...@msi.umn.edu Cc: Jean-Francois Payotte jean-francois.payo...@dnalandmarks.ca, galaxy-dev@lists.bx.psu.edu galaxy

Re: [galaxy-dev] Error Report contains STDERR from different job

2013-03-08 Thread Jean-Francois Payotte
Dear Eric, I'm glad to know that I am not the only one having this bug. (Even though I would prefer if neither of us would have it). ;) I've already written twice to the galaxy mailing-list, but I didn't receive any answers so far. Let's hope someone will be able to help us solve this issue.

[galaxy-dev] Strange issue where the dataset reported in the bug report doesn't correspond to the current dataset

2013-02-27 Thread Jean-Francois Payotte
Dear Galaxy mailing-list, We are currently facing a strange issue with our local Galaxy installation (distribution from Jan. 11 2013). I'm going to try to describe the problem as much as I can, and feel free to ask for more details if it can help in solving this issue. So basically, we have a

[galaxy-dev] How to retrieve the current history ID

2012-06-14 Thread Jean-Francois Payotte
Hi, I already asked a similar question to the Galaxy mailing list toward this topic, but it didn't quite solve my problem. I was seeking help on a way to create a tool which would be able to retrieve all the details (the information you get when clicking on the eye icon in a job in the

Re: [galaxy-dev] How to retrieve the current history ID

2012-06-14 Thread Jean-Francois Payotte
Galaxy releases.. Best regards, Jean-François From: Peter Cock p.j.a.c...@googlemail.com To: Jean-Francois Payotte jean-francois.payo...@dnalandmarks.ca Cc: galaxy-dev@lists.bx.psu.edu Date: 14/06/2012 09:17 AM Subject:Re: [galaxy-dev] How to retrieve the current history

Re: [galaxy-dev] Incomplete datasets when dowloaded from history

2012-06-07 Thread Jean-Francois Payotte
, Jean-François From: Jennifer Jackson j...@bx.psu.edu To: Jean-Francois Payotte jean-francois.payo...@dnalandmarks.ca Cc: galaxy-dev@lists.bx.psu.edu Date: 07/06/2012 10:49 AM Subject:Re: [galaxy-dev] Incomplete datasets when dowloaded from history Hello Jean-François