Re: [galaxy-dev] Markup safe egg problem/fetching the wrong eggs?

2014-02-28 Thread Joseph Ward
or wrote: > Hi Joe, > > Something is automatically re-fetching the Python 2.6 eggs? Is the > Galaxy server itself using 2.6 perhaps? > > --nate > > On Fri, Feb 28, 2014 at 3:42 AM, Joseph Ward > wrote: > > Hi, > > > > I've got a strange problem with python

[galaxy-dev] Markup safe egg problem/fetching the wrong eggs?

2014-02-28 Thread Joseph Ward
Hi, I've got a strange problem with python paths/eggs. When I run any tool that produces html/text output I get the error: WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched. So if I close galaxy, delete the eggs folder, run fetch_eggs.py (on the cluster, sourcing

[galaxy-dev] Setting access role for datasets through the API

2014-02-17 Thread Joseph Ward
Hi, I'm trying to use the API to upload data into galaxy, setting the access and modify roles as I do so. I've managed to get the roles working for the libraries (using LIBRARY_ACCESS_in and LIBRARY_MODIFY_in) but when it's uploaded the access roles for the datasets are all set to my personal rol