ly get it working again
>>> for your local use by editing the
>>> tools/human_genome_variation/freebayes.xml file to comment out the
>>> no-longer-valid parameter in line 34:
>>>
>>> -Y $params.postIntegBanddepth
>>>
>>>
>>&g
ngs moving again for you,
>
> Dannon
>
>
> On Apr 1, 2011, at 1:17 PM, Juan Carlos Perin wrote:
>
>> I'm trying to run Freebayes SNP calling on a bam file from a BWA alignment
>> of solid data. I keep getting the following error:
>>
>
I'm trying to run Freebayes SNP calling on a bam file from a BWA alignment of
solid data. I keep getting the following error:
[bam_sort_core] merging from 40 files...
freebayes: invalid option -- Y
did you mean --bam ?
I'm not sure where this is set in the code to try to debug things. I'm
won
