[galaxy-dev] Jobs deleted staying in 'dr' status

2013-09-12 Thread Mathieu Bahin
Hi all, We have been developing our own Galaxy instance for a while now. We have a cluster on which the job are sent to be executed, it is managed through SGE. Usually, communication between SGE and DRMAA is ok and we don't have any problem with that. When a job is deleted by the user, most

[galaxy-dev] Exit_code not working anymore

2013-07-12 Thread Mathieu Bahin
Hi all, We have a Galaxy instance that we are regularly keeping up to date following the Galaxy main, so we have the current version (fd4113962c32 commit). For us, since a few updates (unfortunately, I don't know when it started), the exit_code tag is not working anymore. I made the simplest

Re: [galaxy-dev] New release : display problem

2013-02-15 Thread Mathieu Bahin
Hi, Enclosed is a dataset that I am not able to see anymore. I don't see any error in the log (but maybe I missed it !). To answer to Carlos, I have the problem with Firefox and Chrome. Cheers, Mathieu - Mail original - De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin

Re: [galaxy-dev] New release : display problem

2013-02-14 Thread Mathieu Bahin
- Mail original - De: Dannon Baker dannon.ba...@gmail.com À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: galaxy-dev@lists.bx.psu.edu Envoyé: Jeudi 14 Février 2013 00:55:46 Objet: Re: [galaxy-dev] New release : display problem Mathieu, To clarify -- is this after the new galaxy-dist

[galaxy-dev] New release : display problem

2013-02-13 Thread Mathieu Bahin
Hi there, I am using my own Galaxy instance and since I updated, I can't see file of several datatypes (for example the 'tabular' ) clicking on the eye icon. Is that a problem linked to the new release ? Cheers, Mathieu Bahin

Re: [galaxy-dev] Bug report : JSONDecodeError

2012-11-13 Thread Mathieu Bahin
| | toolfactory | ++ 4 rows in set (0.00 sec) The mothur entries in 'shed_tool_conf.xml' file and the mothur repository are still existing. Cheers, Mathieu Bahin - Mail original - De: Greg Von Kuster g...@bx.psu.edu À: Mathieu Bahin mathieu.ba...@irisa.fr

Re: [galaxy-dev] Bug report : JSONDecodeError

2012-11-13 Thread Mathieu Bahin
Kuster g...@bx.psu.edu À: Mathieu Bahin mathieu.ba...@irisa.fr Cc: Galaxy Dev galaxy-...@bx.psu.edu Envoyé: Mardi 13 Novembre 2012 14:29:39 Objet: Re: [galaxy-dev] Bug report : JSONDecodeError Hi Mathieu, As I mentioned in my previous email, here is the select that is needed. I need to see

Re: [galaxy-dev] Bug report : JSONDecodeError

2012-11-12 Thread Mathieu Bahin
Hi Greg ! Thanks for the quick answer. I am using the 7720 parent version but I keep it up-to-date without any problems. Enclosed you'll find the 'paster.log' file generated when I start Galaxy and try to access the manage installed tool shed repositories page. Cheers, Mathieu Bahin