Hi Folks,
I suspect I know the answer to this question already, but I have to ask
just for the sake of completeness...
I'm working on a tool for which I'd like to query an external server for
the set of expected inputs, and then make that set available as input
options. The tool in question
with a clean install today (including an
'hg update stable') and a clean shed_tools subdirectory.
I hope this helps. In the meantime, thanks, everyone for all of your help!
Melissa
On Fri, Sep 12, 2014 at 12:02 PM, Melissa Cline cl...@soe.ucsc.edu wrote:
Thanks, folks! Everything you've said has
inline responses should hopefully clarify that.
--Dave B.
On 09/10/2014 05:49 PM, Melissa Cline wrote:
Hi Folks,
Okay, I really need debugging ideas on this one.
I have three repositories I'm developing under the test toolshed.
They're named start_xena, xena_import
Hi Folks,
Okay, I really need debugging ideas on this one.
I have three repositories I'm developing under the test toolshed. They're
named start_xena, xena_import and xena_find_datasets (they're all under
visualization). start_xena contains a simple tool dependency to a package
named
Hi folks,
I'm working on a tool that queries a database based on user input, where
this user input is a text parameter. The wildcard for the database is the
percent (%) character. The user input, which is ultimately translated into
the query, should be able to contain a % character. For
The full tool is on the tool shed.
https://toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder
Hope this helps.
-John
On Tue, Sep 9, 2014 at 10:08 PM, Melissa Cline cl...@soe.ucsc.edu wrote:
Hi folks,
I'm working on a tool that queries a database based on user input, where
this user input
: galaxy-dev-boun...@lists.bx.psu.edu [mailto:galaxy-dev-bounces@
lists.bx.psu.edu] On Behalf Of Peter Cock
Sent: zaterdag 30 augustus 2014 4:32
To: Melissa Cline
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] Examples of Galaxy tools in the toolsheds that
install and run JAR files properly?
On Sat
Hi folks,
I'm attempting something that should be straightforward, but it's not. I
have a tool that runs a JAR file, which I have bundled with the tool. I
simply want to run the JAR file. And to paraphrase Thomas Edison, I've
tried several thousand things that do not work (at least for me),
Hi folks,
A few days ago, I asked how Galaxy maintains its knowledge of the user,
even if the user hasn't logged in, such that two different anonymous users
see their respective histories (and not each other's) when they return to
Galaxy sometime later. I got the response that I was guessing I
Hi folks,
Quick question. When two different users use the same Galaxy instance
without logging in, how does Galaxy keep their identities straight, such
that when they come back to their computers the next day, they see only
their own workspace and not the other user's workspace?
Thanks!
17.06.2014 01:07, schrieb Melissa Cline:
Hi folks,
Hopefully this is a quick question. I'm working on a set of tools that
will fire off a VM from within Galaxy and will then communicate with the
VM. The VM will create a local database.
Are we talking here about a local Galaxy database or a tool
, 2014 at 11:23 PM, Björn Grüning
bjoern.gruen...@gmail.com
wrote:
Hi Melissa,
Am 17.06.2014 01:07, schrieb Melissa Cline:
Hi folks,
Hopefully this is a quick question. I'm working on a set of tools that
will fire off a VM from within Galaxy and will then communicate with the
VM
Hi folks,
Hopefully this is a quick question. I'm working on a set of tools that
will fire off a VM from within Galaxy and will then communicate with the
VM. The VM will create a local database. The vision is that this won't be
a shared database; in a shared Galaxy instance, each user will
Hi folks,
We're working on developing a VM which we'd like to be tightly coordinated
with Galaxy, such that VM users can export data from the VM into Galaxy,
perform further analyses on that data, and then import the analysis results
into the VM for storage (from where it will serve additional
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