Re: [galaxy-dev] Run Jobs as Real User - How to Configure it for TORQUE

2014-07-25 Thread Ping Luo
these steps, I am able to run galaxy jobs as the real user. Now I need to see how to fix 1 and 2 in an elegant way. Ping On Thu, Jul 24, 2014 at 12:05 PM, Ping Luo luop0...@gmail.com wrote: Nate and John, I tried with pbs-drmaa and it crashed my galaxy server when the server was started

Re: [galaxy-dev] Run Jobs as Real User - How to Configure it for TORQUE

2014-07-24 Thread Ping Luo
be happy to field pull requests to add this - because I doubt anyone on the core team will be able to get to this anytime soon. Sorry I don't have better news. -John On Sun, Jul 20, 2014 at 11:26 PM, Ping Luo luop0...@gmail.com wrote: I have installed pbs_python module on our cluster

[galaxy-dev] Run Jobs as Real User - How to Configure it for TORQUE

2014-07-20 Thread Ping Luo
I have installed pbs_python module on our cluster to interface Galaxy with TORQUE. I am able to submit and run jobs on our cluster as the Galaxy user. I need to run Galaxy jobs as the real user. The instruction in the user guide is for DRMAA interface. How can I configure running jobs as real user