Re: [galaxy-dev] Keeping Galaxy up to date

2014-09-11 Thread Sebastian Schaaf
should look for (new versions of universe_wsgi.ini.sample, datatypes_conf.xml.sample, etc.) would certainly be helpful, so I'll expand the keeping up to date page on getgalaxy.org into a new page and add more details. On Tue, Sep 9, 2014 at 6:55 AM, Sebastian Schaaf sch...@ibe.med.uni

Re: [galaxy-dev] Keeping Galaxy up to date

2014-09-09 Thread Sebastian Schaaf
search at: http://galaxyproject.org/search/mailinglists/ -- Sebastian Schaaf, M.Sc. Bioinformatics Faculty Coordinator NGS Infrastructure Chair of Biometry and Bioinformatics Department of Medical Informatics, Biometry and Epidemiology (IBE) University of Munich Marchioninistr. 15, K U1 (postal

Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval Tool

2014-08-26 Thread Sebastian Schaaf
by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Sebastian Schaaf, M.Sc

Re: [galaxy-dev] Announcing the UK Galaxy Community

2014-08-14 Thread Sebastian Schaaf
subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Sebastian Schaaf, M.Sc. Bioinformatics Faculty Coordinator NGS Infrastructure Chair

Re: [galaxy-dev] Careful data migration

2014-01-14 Thread Sebastian Schaaf
by directory). Regards, Hans-Rudolf On 01/13/2014 05:33 PM, Sebastian Schaaf wrote: Hi @ all, I would like to know if anyone could give me some guidance or hint on how to migrate data 'correctly' if Galaxy already wrote files, worked on the database etc. The situation is that we set up

[galaxy-dev] Careful data migration

2014-01-13 Thread Sebastian Schaaf
documentation on that issue? The answer(s) may diverge, depending on to which of the five parameters announced above those questions are addressed... Any help appreciated before blowing up our production instance :). Thanks in advance, Best regards, Sebastian -- Sebastian Schaaf, M.Sc

[galaxy-dev] Proxy error while testing FASTX tools?

2013-06-25 Thread Sebastian Schaaf
a bit confused what that means to me, beyond just not to be able to use the test suite. Anyone an idea what could and/or should be fixed or checked? Thanks in advance, Sebastian -- Sebastian Schaaf, M.Sc. Bioinformatics Department of Medical Informatics, Biometry and Epidemiology (IBE

[galaxy-dev] Panels disappearing when choosing tools

2013-06-19 Thread Sebastian Schaaf
not note anything during this access. Due to the fact that I'm nearly right the opposite of a webserver god (but willed to learn) I would really appreciate your help to fix this. Thanks in advance, Sebastian -- Sebastian Schaaf, M.Sc. Bioinformatics University of Munich

[galaxy-dev] Clone Galaxy from repository: mercurial from behind proxy?

2013-06-18 Thread Sebastian Schaaf
http_proxy.host=url:port clone https://bitbucket.org/galaxy/galaxy-dist#stable' Nothing worked out. Does anyone experienced similar behaviour or has got some ideas how to solve this? Thanks in advance, Sebastian -- Sebastian Schaaf, M.Sc. Bioinformatics University of Munich

Re: [galaxy-dev] Clone Galaxy from repository: mercurial from behind proxy?

2013-06-18 Thread Sebastian Schaaf
not affect galaxy. btw: just started the server up, no complains yet. Dannon Baker schrieb: On Tue, Jun 18, 2013 at 10:54 AM, Sebastian Schaaf sch...@ibe.med.uni-muenchen.de mailto:sch...@ibe.med.uni-muenchen.de wrote: Thus, the cloning process as the LDAP user (did not want to store

Re: [galaxy-dev] Re-starting Galaxy

2012-08-27 Thread Sebastian Schaaf
-380-7564 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Sebastian Schaaf, M.Sc

Re: [galaxy-dev] Local Galaxy concept system: hardware spec questions

2012-08-14 Thread Sebastian Schaaf
: in the meantime I had this meeting, we gained some more days. At least until mid of next week. Anyway, if someone could offer some measured values or experiences I would be very glad. Thanks, Sebastian -- Sebastian Schaaf, M.Sc. Bioinformatics Chair of Biometry and Bioinformatics Department

Re: [galaxy-dev] Local Galaxy concept system: hardware spec questions

2012-08-13 Thread Sebastian Schaaf
Yes, thanks, I should have mentioned that. I posted in both forum and dev-list, because I don't expect the forum members and the dev-list subscribers to be a 100% identical... Sorry for any inconvenience... Peter Cock wrote: On Mon, Aug 13, 2012 at 11:23 AM, Sebastian Schaaf sch

Re: [galaxy-dev] Galaxy Czars: Web conference Monday, July 9th 9 am

2012-07-09 Thread Sebastian Schaaf
simultaneous talkers. Please only select the talk button when you need to actually talk to reduce background noise and to free up lines for others to participate. Thanks! Ann Black-Ziegelbein University of Iowa -- Sebastian Schaaf, M.Sc. Bioinformatics Chair of Biometry and Bioinformatics

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Sebastian Schaaf
on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Sebastian Schaaf, M.Sc. Bioinformatics Chair of Biometry and Bioinformatics Department of Medical Information Sciences

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Sebastian Schaaf
, Sebastian Schaaf wrote: Also hello to everyone, As I browsed through those tabs which are open for weeks I rediscovered the online survey Interested in Deploying Your Own Local Galaxy? connected to this thread here. The last response I could find in this context was the one below which