Re: [galaxy-dev] Keeping Galaxy up to date

2014-09-11 Thread Sebastian Schaaf
ok > > A bit of documentation on what you should look for (new versions of > universe_wsgi.ini.sample, datatypes_conf.xml.sample, etc.) would certainly > be helpful, so I'll expand the "keeping up to date" page on getgalaxy.org > into a new page and add more details

Re: [galaxy-dev] Keeping Galaxy up to date

2014-09-09 Thread Sebastian Schaaf
lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > -- Sebastian Schaaf, M.Sc. Bioinformatics Faculty Coordinator NGS Infrastructure Chair of Biometry

Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval Tool

2014-08-26 Thread Sebastian Schaaf
_ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use t

Re: [galaxy-dev] Announcing the UK Galaxy Community

2014-08-14 Thread Sebastian Schaaf
subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Sebastian Schaaf, M.Sc. Bioinformatics Faculty Coordinator NGS Infrastructure Chair

Re: [galaxy-dev] Careful data migration

2014-01-14 Thread Sebastian Schaaf
ge, that you can do it step by step (ie directory by directory). Regards, Hans-Rudolf On 01/13/2014 05:33 PM, Sebastian Schaaf wrote: Hi @ all, I would like to know if anyone could give me some guidance or hint on how to migrate data 'correctly' if Galaxy already wrote files, wor

[galaxy-dev] Careful data migration

2014-01-13 Thread Sebastian Schaaf
and appropriate) just to move all contents of the old folders to the new locations? Did I miss any existing documentation on that issue? The answer(s) may diverge, depending on to which of the five parameters announced above those questions are addressed... Any help appreciated before blowi

Re: [galaxy-dev] Licensing Galaxy workflows; are they software or documents?

2013-08-19 Thread Sebastian Schaaf
keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://g

[galaxy-dev] Proxy error while testing FASTX tools?

2013-06-25 Thread Sebastian Schaaf
ution, nor any of the text files within the galaxy root dir contained '9441' as part of a configuration option. Finally I'm a bit confused what that means to me, beyond just not to be able to use the test suite. Anyone an idea what could and/or should be fixed or checked?

[galaxy-dev] Panels disappearing when choosing tools

2013-06-19 Thread Sebastian Schaaf
the other hand it is obvious that most of the info around e.g the accessing browser etc. is missing. The error log does not note anything during this access. Due to the fact that I'm nearly right the opposite of a webserver god (but willed to learn) I would really appreciate

Re: [galaxy-dev] Clone Galaxy from repository: mercurial from behind proxy?

2013-06-18 Thread Sebastian Schaaf
ke it does not affect galaxy. btw: just started the server up, no complains yet. Dannon Baker schrieb: On Tue, Jun 18, 2013 at 10:54 AM, Sebastian Schaaf <mailto:sch...@ibe.med.uni-muenchen.de>> wrote: Thus, the cloning process as the LDAP user (did not want to store the foreig

Re: [galaxy-dev] Clone Galaxy from repository: mercurial from behind proxy?

2013-06-18 Thread Sebastian Schaaf
to-use-a-proxy-server/ 2.http://stackoverflow.com/questions/8991608/configuration-for-using-mercurial-with-bitbucket-from-behind-a-certificate-rewri On 18 June 2013 19:48, Sebastian Schaaf mailto:sch...@ibe.med.uni-muenchen.de>> wrote: Hi all, I'm currently

[galaxy-dev] Clone Galaxy from repository: mercurial from behind proxy?

2013-06-18 Thread Sebastian Schaaf
https_proxy'. Another approach described was to call 'hg --config http_proxy.host=url:port clone https://bitbucket.org/galaxy/galaxy-dist#stable' Nothing worked out. Does anyone experienced similar behaviour or has got some ideas how to solve this? Thanks in adva

Re: [galaxy-dev] Re-starting Galaxy

2012-08-27 Thread Sebastian Schaaf
> Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ -- Sebastian Schaaf, M.Sc. Bioinformatics Chair of Biometry and Bioin

Re: [galaxy-dev] Local Galaxy concept system: hardware spec questions

2012-08-14 Thread Sebastian Schaaf
pt. I'll come back to you for that. And also to the Czars group where this topic came up as one of the first ones. Good luck! -Scott Thanks, I'll need some of that. UPDATE: in the meantime I had this meeting, we gained some more days. At least until mid of next week. Anyw

Re: [galaxy-dev] Local Galaxy concept system: hardware spec questions

2012-08-13 Thread Sebastian Schaaf
Yes, thanks, I should have mentioned that. I posted in both forum and dev-list, because I don't expect the forum members and the dev-list subscribers to be a 100% identical... Sorry for any inconvenience... Peter Cock wrote: On Mon, Aug 13, 2012 at 11:23 AM, Sebastian Schaaf wrote

[galaxy-dev] Local Galaxy concept system: hardware spec questions

2012-08-13 Thread Sebastian Schaaf
for that), but any clue to a single question would help. "Unfortunately" we got the money to place the order for our own hardware unexpectedly quick, and we are now forced to act. We want to make as few cardinal errors as possible... Thanks a lot in advance, Sebastian -- Se

Re: [galaxy-dev] Galaxy Czars: Web conference Monday, July 9th 9 am

2012-07-09 Thread Sebastian Schaaf
up your audio line. There can only be 6 simultaneous talkers. Please only select the talk button when you need to actually talk to reduce background noise and to free up lines for others to participate. Thanks! Ann Black-Ziegelbein University of Iowa -- Sebastian Schaaf, M.Sc. Bioinformati

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Sebastian Schaaf
14 AM, Sebastian Schaaf wrote: Also hello to everyone, As I browsed through those tabs which are open for weeks I rediscovered the online survey "Interested in Deploying Your Own Local Galaxy?" connected to this thread here. The last response I could find in this context was the one

Re: [galaxy-dev] Interested in speaking with other institutions deploying Galaxy locally?

2012-06-28 Thread Sebastian Schaaf
ease keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Sebastian Schaaf, M.Sc. Bioinformatics Chair of Biometry and Bioinformatics Department