[galaxy-dev] question on installing galaxy on EC2 centos instance

2012-12-05 Thread Sun, Wenping [USA]
Dear galaxy-dev members, I am new to the list and seeking some advices on working galaxy with ec2. I am working on installing galaxy on ec2 centos instance and have everything set up. Now when I execute run.sh and have the following message on ... Starting server in

Re: [galaxy-dev] [External] Re: question on installing galaxy on EC2 centos instance

2012-12-05 Thread Sun, Wenping [USA]
Hi Carlos, I thought it was added but only 80 there when I checked. I just added 8080 and now it is working! Thank you very much, Kathryn From: Carlos Borroto [mailto:carlos.borr...@gmail.com] Sent: Wednesday, December 05, 2012 10:12 AM To: Sun, Wenping [USA] Cc: galaxy-...@bx.psu.edu Subject

[galaxy-dev] question of galaxy on cloud

2012-12-18 Thread Sun, Wenping [USA]
Dear Galaxy members, I am new to galaxy and just installed galaxy on aws cloud. I am testing how it works and have the following question below: 1. If I upload dataset with url, where the data location after uploading? 2. How many Gb space from root of instance would be more effici

[galaxy-dev] workflow loading error in galaxy cloudman

2013-01-11 Thread Sun, Wenping [USA]
Dear Galaxy group, I am uploading the double-ended NGS workflow (Galaxy-Workflow-mt_analysis_0.01_strand-specific_(fastq_double).ga from galaxy website) to galaxy cloudman and had the following error -- Workflow mt analysis 0.01 strand-specific (fastq double) (imported from uploaded file) impo

Re: [galaxy-dev] [External] Re: macs error for chipseq data

2013-01-11 Thread Sun, Wenping [USA]
-Original Message- From: Dannon Baker [mailto:dannonba...@me.com] Sent: Friday, January 11, 2013 12:12 PM To: Jennifer Jackson Cc: Galaxy Dev; Sun, Wenping [USA] Subject: [External] Re: macs error for chipseq data There's an issue with the MACS installation on the current cloud tools v

Re: [galaxy-dev] [External] Re: macs error for chipseq data

2013-01-11 Thread Sun, Wenping [USA]
al Message- From: Dannon Baker [mailto:dannonba...@me.com] Sent: Friday, January 11, 2013 4:56 PM To: Sun, Wenping [USA] Cc: Jennifer Jackson; Galaxy Dev Subject: Re: [External] Re: macs error for chipseq data 1.3.7.1 is definitely the version you want -- the Galaxy wrappers are not yet compa

Re: [galaxy-dev] [External] Re: macs error for chipseq data

2013-02-27 Thread Sun, Wenping [USA]
Hello, When I sudo galaxy user at ssh terminal, the password prompted for galaxy. What is it? Thanks, Kathryn -Original Message- From: Dannon Baker [mailto:dannonba...@me.com] Sent: Friday, January 11, 2013 12:12 PM To: Jennifer Jackson Cc: Galaxy Dev; Sun, Wenping [USA] Subject

Re: [galaxy-dev] [External] Re: data from galaxy

2013-03-01 Thread Sun, Wenping [USA]
or the help, Kathryn From: Dannon Baker [mailto:dannon.ba...@gmail.com] Sent: Friday, March 01, 2013 9:06 AM To: Sun, Wenping [USA] Cc: Galaxy Dev Subject: Re: [External] Re: data from galaxy I'm a little confused about the state of this instance. In the cloud admin panel, you have a user lis

Re: [galaxy-dev] [External] Re: data from galaxy

2013-03-04 Thread Sun, Wenping [USA]
unday, March 03, 2013 6:56 PM To: Sun, Wenping [USA] Cc: Galaxy Dev Subject: Re: [External] Re: data from galaxy Can you share the cluster log with me and I'll try to figure out what's happened here? The fact that the admin users are listed indicates that you're definitely working wi

Re: [galaxy-dev] [External] Re: [galaxy-user] Question on galaxy data visualization

2013-05-16 Thread Sun, Wenping [USA]
there. Thanks! Kathryn From: Jennifer Jackson [mailto:j...@bx.psu.edu] Sent: Monday, May 13, 2013 6:18 PM To: Sun, Wenping [USA] Cc: galaxy-u...@lists.bx.psu.edu Subject: [External] Re: [galaxy-user] Question on galaxy data visualization Hello Kathryn, Trackster is the primary data visualization

[galaxy-dev] Recall: [External] Re: [galaxy-user] Question on galaxy data visualization

2013-05-16 Thread Sun, Wenping [USA]
Sun, Wenping [USA] would like to recall the message, "[External] Re: [galaxy-user] Question on galaxy data visualization". ___ Please keep all replies on the list by using "reply all" in your mail client. To manage y

[galaxy-dev] Recall: [External] Re: [galaxy-user] Question on galaxy data visualization

2013-05-16 Thread Sun, Wenping [USA]
Sun, Wenping [USA] would like to recall the message, "[External] Re: [galaxy-user] Question on galaxy data visualization". ___ Please keep all replies on the list by using "reply all" in your mail client. To manage y