Re: [galaxy-dev] Workflow param error leads to template error [patch]

2014-09-19 Thread Tim Booth
alaxy-server/database/compiled_templates/workflow/run.mako.py', line 257 in render_body for ic in oc.input_step.module.get_data_inputs(): AttributeError: 'WorkflowStep' object has no attribute 'module' === Cheers, TIM On Thu, 2014-09-18 at 22:12 +0100, Dannon Baker wrote

Re: [galaxy-dev] Workflow param error leads to template error [patch]

2014-09-18 Thread Tim Booth
would fix error, it didn't) > Hosting OS: CentOS 6 > > -- > Paul Agapow (paul-michael.agapow at hpa.org.uk) > Bioinformatics, Health Protection Agency (UK) > -- Tim Booth NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benso

Re: [galaxy-dev] Galaxy packages for Bio-Linux - an update + Apache proxying

2014-03-31 Thread Tim Booth
ut of the galaxy-dist > directory, so our goals are aligning. Not everything can be moved > without some trickery (e.g. symlinks) but most paths, including the > paths to shed_*.xml are configurable in universe_wsgi.ini (which > itself need not live in the galaxy-dist directory).

Re: [galaxy-dev] Galaxy packages for Bio-Linux - an update + Apache proxying

2014-03-24 Thread Tim Booth
, like database > backend to use, home URL, admin user/password, etc... > > Thanks for your work on this, > Carlos > > > On Fri, Dec 13, 2013 at 7:03 AM, Tim Booth wrote: > > Hi All, > > > > As previously mentioned, I'm back working on packaging th

Re: [galaxy-dev] Remote User Logout

2014-01-27 Thread Tim Booth
.location.replace('logout.html')};r.open('get','logout.html',true,'logout','logout');r.send(); === -- Tim Booth NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benson

Re: [galaxy-dev] Galaxy packages for Bio-Linux - an update + Apache proxying

2013-12-20 Thread Tim Booth
needed the relevant Apache2 modules. Cheers, TIM > Thanks for your work on this, > Carlos > > > On Fri, Dec 13, 2013 at 7:03 AM, Tim Booth wrote: > > Hi All, > > > > As previously mentioned, I'm back working on packaging the Galaxy server > > as DE

[galaxy-dev] Galaxy packages for Bio-Linux - an update + Apache proxying

2013-12-13 Thread Tim Booth
ps://launchpad.net/~nebc/+archive/galaxy/+sourcepub/3711751/+listing-archive-extra Cheers, TIM -- Tim Booth NERC Environmental Bioinformatics Centre Centre for Ecology and Hydrology Maclean Bldg, Benson Lane Crowmarsh Gifford Wallingford, England OX10 8BB

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-22 Thread Tim Booth
you'll see: > > http://www.bx.psu.edu/~nate/galaxy/noajax.png > > --nate > > On Oct 4, 2013, at 11:48 AM, Tim Booth wrote: > > > Hi Guys, > > > > Thanks for the replies. In that case it looks like the problem with my > > DEB package is not

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Tim Booth
end implementation and 2) if fixing the bug is time > consuming it might be reasonable to not invest that time and wait > until we complete the new client code for the upload process. > > > Thanks, > Sam > > > On Fri, Oct 4, 2013 at 11:48 AM, Tim Booth wrote: >

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Tim Booth
ta_source/upload.xml, but > that makes the UI a lot less usable, especially for large files. > > --nate > > > > > -John > > > > On Fri, Oct 4, 2013 at 8:55 AM, Carlos Borroto > > wrote: > >> On Fri, Oct 4, 2013 at 8:11 AM, Tim Booth

[galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Tim Booth
ource code docs and my rapidly increasing Python-fu. Trying to fathom the interactions between the threads and the browser and the SQLAlchemy layer I either need a good outline document or a developer to hold my hand for a bit. Can someone help me out with this one? Thanks in advance, TIM --

Re: [galaxy-dev] Galaxy Server on Bio-Linux

2012-01-05 Thread Tim Booth
; as possible installing from source on production systems, as things > can get easily out of hand when trying to keep everything updated. > > Mesude, I recently joined Debian Med > (http://www.debian.org/devel/debian-med/ and > https://launchpad.net/~debian-med) which the exact same