splaying-dataset-paths-in-the-UI-td4142007.html>
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>
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> It works very well for us.
>
> Regards, Hans
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> On 04/05/2012 08:46 PM, W. Augustine Dunn III wrote:
>
>> Hello all:
>>
>> There are times when I want to explore data produced ins
Hello all:
There are times when I want to explore data produced inside my local galaxy
site without using galaxy tools. For example, I may want to run a custom
script or even just a grep type function from the command line on a couple
CuffDiff output files to get an idea of whats inside.
This re
I suppose what I meant to say was that since I was able to add the
metazoa.ensembl.org biomart by modifying the existing biomart xml, would
this not also work for VB's biomart instance? Or would this not be what you
are looking for?
Actually, re-reading your OP, is it that you are asking for gala
I have been able to add a new biomart interface to my local instance that
points to the metazoa.ensembl.org site with very little effort. I have yet
to try vectorbase though. I don't think much would need to be done. But the
rest of the list should chime in for more definitive answers.
Cheers
Gu
First off thank you heartily for pointing me in the right direction here.
It SEEMS like i have managed to accomplish this. Meaning: i finally got the
run to get past the parsing of the config file and now have a process
running on the cpu and the server log shows a command line string that
matche
I want to customize the tophat and related interfaces to allow more than one
fastq file per fwd/rev set as is allowed and very helpful in the CLI
version:
$ tophat -o output -p 8 -r 125 -G annotation.gtf myBowtieIndex
run1_fwd.fastq,run2_fwd.fastq run1_rev.fastq,run2_rev.fastq
Is there a way to se
I am starting to really get the hang of customizing my new galaxy instance,
and please just let me THANK YOU GUYS!
However, I am also running into a problem. I am trying to link genome fasta
files that i obtained through metazoa.ensembl.org. I created a library
called "Genome Sequences" with sub
Thanks every one. I am in Bethesda for a conference at the moment, but I
will try your suggestions when I get back home.
Gus
Sent from my HTC EVO. Please forgive any typos and/or brevity of my reply.
On Jun 28, 2011 4:43 PM, "Nate Coraor" wrote:
> W. Augustine Dunn III wrote:
Hello all:
Please forgive me if this is a matter of RTFM but I can assure you that I
have in fact TRIED that for a day or so now...
I am trying to set up a local GALAXY site for my lab so that I can start to
offload some of the work that comes my way as the sole biologist in our lab
not afraid of
