Hello,
Can anyone tell me if there is a Galaxy VM available for download that
definitely contains the NCBI-BLAST tools?
I have seen several download links for Galaxy VMs that include some tools, but
it is not clear what tools precisely they contain, and if BLAST is one of
them.
Hello,
Can any one please tell me what could be causing this error message when I try
to submit a blast job to Galaxy?
An error occurred running this job:BLAST Database error: No alias or index file
found for protein database
[/9720/genome_references/ncbi/nr-protein-db/nr-newsty
Hello,
Can anyone tell me how to add a tool to Galaxy, to be shown on the panel on the
left? In particular, I'd like to add the 'cuffmerge' tool to the cufflinks (RNA
seq) group under NGS:RNA Analysis. Other cufflinks tools are there
(cufflinks,cuffcompare,cuffdiff), but not cuffmerge.
Hello,
Our local installation of Galaxy doesn't have the 'cuffmerge' tool under
"NGS:RNA RNA-Seq". It has 'cufflinks', 'cuffcompare', and 'cuffdiff', but no
'cuffmerge', which is essential for the workflow. Could anyone tell me how I
could add "cuffmerge" to the list of tools?
Thank you
Hello,
If I were to stop and re-start the Galaxy server with the run.sh script would
jobs that are aleady running or are in the queue be lost when the server is
re-started? If so, is there another method to use which would not lose the
running or queued jobs?
Thank you.
_
Hello,
I modified the Galaxy configuration file and would like to stop and re-start
the Galaxy process. Can you tell me how to do that?
Thank you.
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Hello,
Can you tell me how to become an 'admin' user on Galaxy, or else change the
current admin?
Thank you.
-Ken.
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Hello,
Could you please tell me if it's possible to run Galaxy with an LSF scheduler,
and if so, how?
Thank you.
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Hello,
On our local instance of Galaxy jobs are taking an extremely long time to run,
or they are not run at all. In the history it always says "job is waiting to
run", even simple jobs like reformatting text files to be tab delimited. Is
there a way to 1) check the Galaxy job queue, and 2
