Hello all,
I am trying to write a tool that traces datasets creation for a given Galaxy
history id.
Basically, I am trying to start with one dataset and recursively trace back its
ancestors.
To this end, I communicate with Galaxy using the great BioBlend Python package.
In particular, I'm
Hello all,
I have a problem with Galaxy, and until now I haven't found a solution for it.
We have a tool that has two inputs: one BAM file and one BAI file. The BAI file
is the index of this BAM file.
I noticed that when there is a needed for BAI file of some BAM file, Galaxy
first generate a
Hi,
I found the solution.
I had to update the Tophat wrapper XML from Galaxy repository,
in order to be computable with the newer version of Tophat that we have.
Hope this post will be informative to someone.
Thanks,
Liram
From: VARDI,LIRAM (A-Labs,ex1)
Sent: Tuesday, May 15, 2012 5:57 PM
To:
Hi,
I would like to report about some uploading problem on Galaxy.
When I tried to upload a html file which contains a href link, Galaxy failed
with the following error message:
The uploaded file contains inappropriate HTML content.
Anyway, I found a post about a similar issue and as a result I
Hi Nate,
Great! Thanks.
Any chance that this change will be also included on galaxy-dist soon?
Thanks,
Liram
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Monday, April 30, 2012 11:29 PM
To: VARDI,LIRAM (A-Labs,ex1)
Cc: galaxy-...@bx.psu.edu; BEN-DOR,AMIR
Hello,
I am using Galaxy API for some actions and I must say that this is indeed a
really great feature with a great power.
Anyway, I am trying to write a python script that one of its goals is to remove
some data libraries,
But until now, I was unable to find a way to remove data library or
Hello,
I would like to report on a Galaxy issue and the my proposed solution for it,
hopefully it will be helpful to other Galaxy users that encounter [are
encountering] the same problem.
I tried to upload to my local Galaxy a file that I has been transferred by a
FTP client.
Then, when Galaxy
Hi Hans,
Thank you for your reply.
Anyway, I tried to install Galaxy again by using the site check-out (hg clone
https://...) and it still cause problems.
Specifically, those were my steps:
1) I Installed galaxy in different location.
2) After run run.sh in the first time, I changed
Hello,
My name is Liram Vardi and I'm using local Galaxy instance.
Anyway, I can't clean my deleted datasets from my own locally disk.
When I am trying to delete dataset, as was explained in
http://wiki.g2.bx.psu.edu/Learn/Managing%20Datasets#Actions,
First, I used the delete 'X' icon near the
