[galaxy-dev] Potential issue with eggs ?

2012-02-29 Thread Michael Burrell (TOC)
Good evening all, I am seeing the following issue when attempting to start galaxy. Traceback (most recent call last): File "./scripts/paster.py", line 34, in command.run() File "/home/home/galaxy/software/galaxy-central/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 84

[galaxy-dev] Few possible galaxy bugs ?

2011-10-24 Thread michael burrell (TOC)
Good Morning, I am just in the process of updating our development galaxy, the following issues are been reported and I am unable to resolved them, would anyone have any suggestions. Just a little more background info, galaxy@jic55666:~/software/galaxy-central$ hg tip changeset: 6143:6c8695

[galaxy-dev] Issue, displaying or downloading data.

2011-10-03 Thread michael burrell (TOC)
Good Morning, I have had the following issue reported to me by one of our users and I have confirmed the behaviour. Hi Mike, I'm looking at the new Galaxy at http://jic55666:8080/root and I have found a problem. If I import a dataset from the data libraries, then stuff runs OK. If I uplo

[galaxy-dev] picard error.

2011-09-26 Thread michael burrell (TOC)
Good afternoon, When starting galaxy I find the following errors logged in the paster.log galaxy.tools DEBUG 2011-09-26 13:58:21,577 Loaded tool: PicardASMetrics 0.03 galaxy.tools.test DEBUG 2011-09-26 13:58:21,625 Error in add_param for maxheap: Unable to determine parameter type of test input

[galaxy-dev] hg issue with resolve

2011-09-23 Thread michael burrell (TOC)
Good afternoon all, I am having some issues with hg performing an update, it wants to use vimdiff and this is not the way I like to work. According to the mercurial simply placing the folloing in the ~/.hgrc should make mercurial change back to leaving the < marks when it cannot resol