Hello everyone,
We are working on a central wiki page to create an overview for all custom
visualizations. This includes visualizations using the visualization
framework, but also visualizations created by custom tools.
Please get back to me and provide information on any visualization which is
n
Hi Mathew,
Does the progress bar in the Upload window show any progress?
Thanks,
Sam
On Wed, Jul 9, 2014 at 10:27 AM, Dannon Baker
wrote:
> How large are the files you're attempting to upload?
>
> Another method for uploading with more reliability than web browsers would
> be to use FTP. See
Hi Tim,
How exactly are you trying to view the FTP files? Are you using the Tool
panel ('Get Data' > 'Upload File') or the 'Choose FTP file' button in the
new upload front end?
Thanks,
Sam
On Wed, Apr 23, 2014 at 2:29 AM, Timothy Carr wrote:
> Hi All,
>
> I've discovered a strange FTP related
Hi Lionel,
One option is to place your js code into the visualization framework as
shown here : https://wiki.galaxyproject.org/VisualizationsRegistry
Once you have activated the framework, a button will be provided to run
your js code on a certain dataset file format / tool output file format.
C
Hi Rui,
Are you using the upload tool available in the tool panel under 'Get Data'
> 'Upload file from your computer'? Or the new upload dialog by clicking on
'Load Data'? Could you also please let me know if this error occurs always
or just sometimes?
Thanks Sam
On Thu, Feb 27, 2014 at 8:50 PM
laxy.As a
> result,would you please show me some more details about this?
>
> Regards, Shenwiyn
>
>
> *From:* sam guerler
> *Date:* 2014-02-18 01:20
> *To:* Hans-Rudolf Hotz
> *CC:* shenw...@gmail.com; galaxy-dev
> *Subject:* Re: [galaxy-dev] Local Galaxy web lay
Hi Shenwiyn,
This has changed recently. Please take a look at:
static/scripts/galaxy.menu.js
Using that file, you can add/remove/change labels and their position. It is
recommended to run pack_scripts.py after changing the source file.
Regards, Sam
On Mon, Feb 17, 2014 at 11:33 AM, Hans-Rudol
Hi Nikos,
Thank you so much for your report. This issue should be fixed now. Please
update your revision and try again.
Thanks,
Sam
On Thu, Feb 13, 2014 at 7:52 AM, Nikos Sidiropoulos
wrote:
> Hi all,
>
> after the February 2014 galaxy update I'm experiencing errors in Galaxy
> Reports.
>
> It
branches now.
>
> Thank you,
> --Ricardo Perez
>
> - Original Message -
> From: "sam guerler"
> To: "Ricardo Perez"
> Cc: "Galaxy-dev Galaxy-dev"
> Sent: Tuesday, January 21, 2014 3:19:07 PM
> Subject: Re: [galaxy-dev] Error when sear
Hi Ricardo,
Are you using the newest version from the stable branch or from default?
Thanks,
Sam
On Tue, Jan 21, 2014 at 3:53 PM, Perez, Ricardo wrote:
> Dear All,
>
> When I go to my Galaxy Distibution I go the following place:
> Admin -> Manage installed tool shed repositories
>
> When I sea
Ok, I found it. However I could not reproduce the problem with Chrome and
Safari, yet.
On Wed, Nov 27, 2013 at 3:27 PM, sam guerler wrote:
> Hello David,
>
> Could you provide more details on how to reproduce this i.e. which buttons
> to click to get there?
>
> Thanks,
>
Hello David,
Could you provide more details on how to reproduce this i.e. which buttons
to click to get there?
Thanks,
Sam
On Wed, Nov 27, 2013 at 11:11 AM, David Hoover wrote:
> After the latest update, the "Manage library permissions" page is broken.
> The "Roles not associated" boxes are p
Hi Tim,
Were you able to fix your problem?
Thanks,
Sam
On Fri, Oct 4, 2013 at 1:05 PM, Nate Coraor wrote:
> Tim,
>
> Just to be certain, if you have AJAX upload enabled, you'll see this
> message after you click Execute on the upload tool:
>
> http://www.bx.psu.edu/~nate/galaxy/ajax.png
>
>
Hey,
We are currently refactoring and redesigning the front-end javascript code.
If the bug you are observing is 1) related to specifics of the current
front-end implementation and 2) if fixing the bug is time consuming it
might be reasonable to not invest that time and wait until we complete the
ound that everything else was
> working, it just rendered as right aligned.
>
> Hope this helps!
>
> Eric Rasche
>
> On 10/03/2013 10:44 AM, Peter Cock wrote:
> > The good news is that running the default branch from galaxy-central
> > seems to work, so at some point
gt; >
> > Regards, Hans-Rudolf
>
> Thanks Hans,
>
> On my machine restarting the browser made no difference.
>
> Also (within Galaxy) logging out and logging in made no difference.
>
> On Wed, Oct 2, 2013 at 7:56 PM, sam guerler
> wrote:
> > Hi Peter,
> &
Hi Peter,
Does the Javascript console of the browser show any error messages?
Thanks,
Sam
On Wed, Oct 2, 2013 at 2:48 PM, Björn Grüning <
bjoern.gruen...@pharmazie.uni-freiburg.de> wrote:
> Hi Peter,
>
> we can confirm. Latest Galaxy stable version and its occurring randomly.
> I was not able
Hi Anthonius,
Do you have the BEDTools installed and its directory added to your PATH
environment variable? Trackster uses compressed file formats to reduce the
amount of data transfers.
I hope this helps,
Sam
On Wed, Aug 21, 2013 at 4:11 PM, Anthonius deBoer wrote:
> Hi,
>
> I am using the
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