GALAXY TOOL ERROR REPORT ------------------------ This error report was sent from the Galaxy instance hosted on the server "127.0.0.1:7070" ----------------------------------------------------------------------------- This is in reference to dataset id 13 from history id 6 ----------------------------------------------------------------------------- You should be able to view the history containing the related history item
13: FastQC_SC2T252P15_S1_L001_R1_001.fastq.html by logging in as a Galaxy admin user to the Galaxy instance referenced above and pointing your browser to the following link. 127.0.0.1:7070/history/view?id=e03374982e5c9d8a ----------------------------------------------------------------------------- The user 'yaxi...@gmail.com' provided the following information: This was returned upon attempt to run FasQC on one Illumina gromed dataset. Local galaxy install on RHEL58 ----------------------------------------------------------------------------- job id: 7 tool id: fastqc ----------------------------------------------------------------------------- job command line: python /home/galaxy/galaxy-dist/tools/rgenetics/rgFastQC.py -i "/home/GalaxyUpload/SC2T252P15_S1_L001_R1_001.fastq" -d "/home/galaxy/galaxy-dist/database/job_working_directory/000/7/dataset_13_files" -o "/home/galaxy/galaxy-dist/database/files/000/dataset_13.dat" -n "FastQC" -f "fastq" -j "SC2T252P15_S1_L001_R1_001.fastq" -e "/home/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc" ----------------------------------------------------------------------------- job stderr: Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/rgenetics/rgFastQC.py", line 158, in <module> assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot find executable %s' % opts.executable AssertionError: ##rgFastQC.py error - cannot find executable /home/galaxy/galaxy-dist/tool-data/shared/jars/FastQC/fastqc ----------------------------------------------------------------------------- job stdout: ----------------------------------------------------------------------------- job info: None ----------------------------------------------------------------------------- job traceback: None ----------------------------------------------------------------------------- (This is an automated message). ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/