Re: [galaxy-dev] [galaxy-user] How to create a tool from a script that loads additional source code files?

2013-02-25 Thread Peter Cock
On Mon, Feb 25, 2013 at 7:11 PM, Samuel Lampa wrote: > Hi, > > I have aGalaxy toolwith some R code which is split up into a few files, > which are loaded by a "master R script", which orcestrates and executes the > whole thing. > > I realize that when the master script ("run.R" in my case) is run,

Re: [galaxy-dev] [galaxy-user] How to create a tool from a script that loads additional source code files?

2013-02-25 Thread Samuel Lampa
Hi, thanks for the quick reply! On 02/25/2013 08:39 PM, Peter Cock wrote: I realize that when the master script ("run.R" in my case) is run, it will >not find the other files, since it is itself moved away to a temporary >working directory (something like >".../galaxy/database/job_working_direct

Re: [galaxy-dev] [galaxy-user] How to create a tool from a script that loads additional source code files?

2013-02-26 Thread Peter Cock
On Mon, Feb 25, 2013 at 8:02 PM, Samuel Lampa wrote: > Hi, thanks for the quick reply! > > > On 02/25/2013 08:39 PM, Peter Cock wrote: >>> >>> I realize that when the master script ("run.R" in my case) is run, it >>> will >>> >not find the other files, since it is itself moved away to a temporary