Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-04 Thread Greg Von Kuster
Hello Florent, Sorry for the confusion on this - we are preparing a new Galaxy distribution, and the tool shed wiki has been written in preparation for it. The new distribution will be available fairly soon, and the Galaxy News Brief will include information about these new tool shed features.

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-04 Thread Florent Angly
Hi Greg, Thank you for your help. Your suggestion worked like a charm! I was expecting to see an error because I did not create the ../shed_tool/ folder that contains the tools installed from the shed, but I was happy to see that it was automatically created. I have a few additional comments

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-06 Thread Greg Von Kuster
Hello Florent, Thanks for your comments and suggestions - see my inline comments. On Oct 4, 2011, at 11:42 PM, Florent Angly wrote: > Hi Greg, > > I have a few additional comments and questions though: > 1/ In the universe_wsgi.ini file, maybe the tool_config_file parameter could > be renamed

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-06 Thread Florent Angly
That would all be terrific. Thanks Greg! Florent On 07/10/11 10:15, Greg Von Kuster wrote: Hello Florent, Thanks for your comments and suggestions - see my inline comments. On Oct 4, 2011, at 11:42 PM, Florent Angly wrote: Hi Greg, I have a few additional comments and questions though: 1/ I

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-10 Thread Greg Von Kuster
Hello Florent, On Oct 4, 2011, at 11:42 PM, Florent Angly wrote: > Hi Greg, > > Thank you for your help. Your suggestion worked like a charm! > > I was expecting to see an error because I did not create the ../shed_tool/ > folder that contains the tools installed from the shed, but I was happy

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-12 Thread Florent Angly
On 11/10/11 06:25, Greg Von Kuster wrote: Hello Florent, On Oct 4, 2011, at 11:42 PM, Florent Angly wrote: Hi Greg, Thank you for your help. Your suggestion worked like a charm! I was expecting to see an error because I did not create the ../shed_tool/ folder that contains the tools install

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-13 Thread Greg Von Kuster
Hello Forent, On Oct 13, 2011, at 2:48 AM, Florent Angly wrote: > > But maybe I need a little bit of guidance with this because the example > shown, the user is given a _limited_ number of output datasets to choose > from. The Grinder case seems simple: give the user a field where he can > sp

Re: [galaxy-dev] [galaxy-user] Problem with new tool shed

2011-10-13 Thread Florent Angly
Hi Greg, Thanks for the reply. I believe that how easy it is to write tools wrappers plays a big role for how widespread Galaxy becomes. I filed an issue at https://bitbucket.org/galaxy/galaxy-central/issue/670/better-support-for-multiple-outputs so that the issue is recorded. Best, Florent