Re: [galaxy-dev] Anyone has tools for NCBI Lite-SRA format ?

2011-04-04 Thread Stephen Taylor
Hi, We are getting multiple requests for this but did not have the bandwidth to do it. So if you are planning to implement - share through the toolshed and we will roll it to main. The way I got round this was let the SRA website do the conversion. So just paste in the URL in the upload s

Re: [galaxy-dev] Anyone has tools for NCBI Lite-SRA format ?

2011-04-01 Thread Assaf Gordon
anton wrote, On 04/01/2011 09:02 PM: > We are getting multiple requests for this but did not have the > bandwidth to do it. So if you are planning to implement - share > through the toolshed and we will roll it to main. > To start, this patch adds "SRA" binary type with sniffing and upload sup

Re: [galaxy-dev] Anyone has tools for NCBI Lite-SRA format ?

2011-04-01 Thread anton
Assaf: We are getting multiple requests for this but did not have the bandwidth to do it. So if you are planning to implement - share through the toolshed and we will roll it to main. Tx, Anton http://usegalaxy.org On Apr 1, 2011, at 6:09 PM, Assaf Gordon wrote: > Hi all, > > Does any o

[galaxy-dev] Anyone has tools for NCBI Lite-SRA format ?

2011-04-01 Thread Assaf Gordon
Hi all, Does any one have (or galaxy team: are you planning to develop) tools for NCBI's SRA binary container format ? For starters, a wrapper for the "fastq-dump" program that converts a lite-sra back to fastq ? Just trying to avoid re-inverting a wheel, -gordon _