Re: [galaxy-dev] Can't change working directory during tool dependency installation

Stringing commands together in a single shell_command action seems to be a good workaround. Thanks! On the other hand, I wonder if this is the expected behaviour. Wouldn't it defeat the purpose of having a change_directory action, given that the current working directory changes back to the initia

Re: [galaxy-dev] Can't change working directory during tool dependency installation

You might need to specify multiple command lines in a single shell action - separated by ; like: cd foo; perl foo bah; more something; cleanup Otherwise you might just find yourself back in the temp installation directory after each separate action Ross Lazarus Head, Computational Biology, Baker

[galaxy-dev] Can't change working directory during tool dependency installation

I originally posted this question on the Galaxy Biostars, but later realized that galaxy-dev is probably more appropriate. So, here it goes. I'm trying to automate the installation of a tool's dependency with a tool dependency definition repository. During t