Re: [galaxy-dev] Configuration of a local install - mi-deploy ?

2011-11-13 Thread Clare Sloggett
Hi Enis, Thanks, that's great - I actually didn't know about the cloudbiolinux version. It has the yaml configuration functionality which is nice. It looks to me like the one I was looking at in the virtualbox image was actually based on this one, which makes sense if the Amazon image contains bot

Re: [galaxy-dev] Configuration of a local install - mi-deploy ?

2011-11-11 Thread Enis Afgan
Hi Clare, As a technical add-on - you didn't mention what type OS you're looking to install this on so I just wanted to mention that mi-deployment scripts are tested primarily on Ubuntu 10.04 LTS and thus most likely to work properly there. If you're also looking to setup the data, unfortunately th

Re: [galaxy-dev] Configuration of a local install - mi-deploy ?

2011-11-10 Thread Greg Von Kuster
Hi Clare, I misunderstood your initial questions, but with your details below, it's clear you would benefit from using tools_fabfile from mi_deployment, which sets up all the binary dependencies not included with Galaxy. As you mention, you may need to tweak the config settings. On Nov 10, 2

Re: [galaxy-dev] Configuration of a local install - mi-deploy ?

2011-11-10 Thread Clare Sloggett
Hi Greg & Ross, Thanks for this! Yes, I confused the issue by mentioning the Tool Shed, sorry - it's the binaries themselves I need to install. Essentially I think I need to follow the steps at http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup , but I was wondering about mi-deployment scripts a

Re: [galaxy-dev] Configuration of a local install - mi-deploy ?

2011-11-10 Thread Greg Von Kuster
Hello Clare, On Nov 9, 2011, at 11:11 PM, Clare Sloggett wrote: > Hi all, > > Most of our playing around with Galaxy has been in getting it working > on our local cloud, but now for the first time I'm configuring a > non-cloud local install of galaxy-dist (set up as per > http://wiki.g2.bx.psu.e

[galaxy-dev] Configuration of a local install - mi-deploy ?

2011-11-09 Thread Clare Sloggett
Hi all, Most of our playing around with Galaxy has been in getting it working on our local cloud, but now for the first time I'm configuring a non-cloud local install of galaxy-dist (set up as per http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server) So I have some naive questio