Timothy Wu wrote:
On Thu, Sep 15, 2011 at 5:32 PM, Timothy Wu 2hug...@gmail.com wrote:
On Thu, Sep 15, 2011 at 4:58 PM, Peter Cock
p.j.a.c...@googlemail.comwrote:
On Thu, Sep 15, 2011 at 9:32 AM, Timothy Wu 2hug...@gmail.com wrote:
I think I need some kind of data source
On Wed, Sep 14, 2011 at 5:21 PM, Hans-Rudolf Hotz h...@fmi.ch wrote:
On 09/14/2011 10:39 AM, Timothy Wu wrote:
//
Alternatively, I can just ask user to download from NCBI ftp themselves,
decompress them, and upload it to galaxy.
What's the best approach here?
How about: you download
On Thu, Sep 15, 2011 at 9:32 AM, Timothy Wu 2hug...@gmail.com wrote:
I think I need some kind of data source implementation that allow user to
obtain the data themselves. However with the current tool XML definition, I
don't know how to have a FTP download tool to download EST data from NCBI
On Thu, Sep 15, 2011 at 4:58 PM, Peter Cock p.j.a.c...@googlemail.comwrote:
On Thu, Sep 15, 2011 at 9:32 AM, Timothy Wu 2hug...@gmail.com wrote:
I think I need some kind of data source implementation that allow user
to
obtain the data themselves. However with the current tool XML
On Thu, Sep 15, 2011 at 10:32 AM, Timothy Wu 2hug...@gmail.com wrote:
On Thu, Sep 15, 2011 at 4:58 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
Perhaps I have misunderstood you, but I'd just use the provided
Upload Data tool, and paste in the FTP URL for the file, e.g.
an NCBI FTP URL.
On Thu, Sep 15, 2011 at 5:32 PM, Timothy Wu 2hug...@gmail.com wrote:
On Thu, Sep 15, 2011 at 4:58 PM, Peter Cock p.j.a.c...@googlemail.comwrote:
On Thu, Sep 15, 2011 at 9:32 AM, Timothy Wu 2hug...@gmail.com wrote:
I think I need some kind of data source implementation that allow user
to
Hi,
I'm trying to wrap up my own tool in Galaxy. The input to my tool include
the set of EST (such as the entire human collection). I tried using UCSC
genome browser but it doesn't seem to let me download the whole human
collection due to the size of the data.
I tried to implement my own FTP
On 09/14/2011 10:39 AM, Timothy Wu wrote:
//
Alternatively, I can just ask user to download from NCBI ftp themselves,
decompress them, and upload it to galaxy.
What's the best approach here?
How about: you download the data once, and then offer it as a 'data
library' to your users. This
