Re: [galaxy-dev] Error executing tool: 'hg19'

2012-02-14 Thread Joachim Jacob
First, thanks. I just created a new user, and I am ready to go with that user. FYI, the reset of the datatypes_conf.xml did not do the trick: following error appears on the custom builds page: NoConverterException: Conversion from 'fasta' to 'len' not possible Thanks, Joachim On 02/13/2012

Re: [galaxy-dev] Error executing tool: 'hg19'

2012-02-14 Thread Jeremy Goecks
Can you confirm that the following lines are in your datatypes_conf.xml file? -- datatype extension=fasta type=galaxy.datatypes.sequence:Fasta display_in_upload=true converter file=fasta_to_tabular_converter.xml target_datatype=tabular/ converter

[galaxy-dev] Error executing tool: 'hg19'

2012-02-13 Thread Joachim Jacob
Hi, After a quick try with visualising track in Trackster (importing one chromosome of hg19 - which did not succeed BTW), none of the tools in my local galaxy appear to work. They all send this error message: Error executing tool: 'hg19' This bug has been reported before, but I was

Re: [galaxy-dev] Error executing tool: 'hg19'

2012-02-13 Thread Jeremy Goecks
Hello Joachim, After a quick try with visualising track in Trackster (importing one chromosome of hg19 - which did not succeed BTW), none of the tools in my local galaxy appear to work. What are the steps you're taking to produce this issue? They all send this error message: Error

Re: [galaxy-dev] Error executing tool: 'hg19'

2012-02-13 Thread Jeremy Goecks
This bug has been fixed in galaxy-central but, as per one of the threads you found, has not made it to galaxy-dist yet. Try this: 1. assuming you haven't made any changes to datatypes_conf.xml, copy datatypes_conf.xml.sample to datatypes_conf.xml 2. visit the custom builds page (User tab --