Hi,
I'm having the same issue, has it been fixed since then?
Thanks,
L-A
Le 07/11/2011 21:43, Nate Coraor a écrit :
On Nov 4, 2011, at 1:11 PM, Carlos Borroto wrote:
Hi,
Reading a little more about this problem, I see Galaxy uses python
tempfile library
On Nov 4, 2011, at 1:11 PM, Carlos Borroto wrote:
Hi,
Reading a little more about this problem, I see Galaxy uses python
tempfile library (http://docs.python.org/library/tempfile.html),
specifically at line 70 in tools/samtools/sam_to_bam.py:
tmp_dir = tempfile.mkdtemp()
mkdtemp should
Hi Jen,
Thanks for the quick response. The workaround you describe could work,
but I might run into trouble later on.
My interest is to develop a workflow for GATK, which have very strict
requirements on the input BAM file. One of which is that the sorting
have to be exactly the same as the
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Hello Carlos,
If what you want is
