Hi,
I have an issue with filtering using the Filter tool in the sense that the
first line is considered invalid and I think it has to do with the automatic
guessing of column types.
The condition is like: c4 !='XXX'
The value of c4 for the first line is 'NA'
When the paster.log is checked one can
Hi Daniel,
Thanks for the answer.
In my hands it does not work unfortunately but I'm a total python dummy.
Marc
From: Daniel Blankenberg [mailto:d...@bx.psu.edu]
Sent: Friday, February 22, 2013 4:10 PM
To: Marc Logghe
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Filter tool: h
t; Sent: Friday, February 22, 2013 4:10 PM
> To: Marc Logghe
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] Filter tool: how to override automatic guessing of
> column types ?
>
> Hi Marc,
>
> You can force the metadata detection to search your entire file
From: Daniel Blankenberg [mailto:d...@bx.psu.edu]
Sent: Friday, February 22, 2013 4:44 PM
To: Marc Logghe
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Filter tool: how to override automatic guessing of
column types ?
Hi Marc,
Ah, I think I see the issue here, and it has to do
Hi Marc,
You can force the metadata detection to search your entire file by adding a new
set_meta method to your datatype class, e.g. (untested):
def set_meta( self, *args, **kwd ):
kwd['max_data_lines'] = None
kwd['max_guess_type_data_lines'] = None
return super( Clo
