Hi John,
Thank you so much for this detailed explanation. Before I saw your email I went
ahead and manually made changes in the pbs.py script. I didn't follow your
mercurial commands and hope that is not a problem down the road (I guess I
could use the hg revert option then).This seemed to have
This change is very small and was not committed to the stable branch
of galaxy-central so I would just modify the your Galaxy's copy of the
pbs runner file directly until the next release:
% wget
https://bitbucket.org/galaxy/galaxy-central/commits/af5577a24c155fa04aa607ff2fec283634df2fb0/raw
-O /
John,
Thanks for this. I am new to managing galaxy, but how do I go about updating my
galaxy to reflect these changes? I found directions on
https://wiki.galaxyproject.org/Admin/GetGalaxy#Keep_your_code_up_to_date about
pulling changes from the bitbucket repository. Does this preserve my previou
This looks very to similar to an issue discussed here:
http://dev.list.galaxyproject.org/pbs-runner-deserializes-server-names-as-unicode-tt4663616.html.
The default branch of Galaxy contains changeset that should address
this issue -
https://bitbucket.org/galaxy/galaxy-central/commits/af5577a24c1
Hi guys,
I keep getting an error everytime I start up the galaxy server. I am guessing
this has to do with a job that galaxy is trying to resume and cannot find.
galaxy.jobs.runners ERROR 2014-04-02 09:31:10,889 Unhandled exception checking
active jobs
Traceback (most recent call last):
File
