Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-24 Thread Nate Coraor
. > Is there any guidline for me? Thanks a lot. > > Ciao, > Ben > > From: Björn Grüning > Date: 2014-07-22 16:15 > To: 王渭巍; Björn Grüning; galaxy-dev > Subject: Re: [galaxy-dev] How to configure galaxy with a cluster > Hi Ben, > > if the job is in waiting in th

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-24 Thread 王渭巍
to try do some customizing to the web interface of the tools. Is there any guidline for me? Thanks a lot. Ciao, Ben From: Björn Grüning Date: 2014-07-22 16:15 To: 王渭巍; Björn Grüning; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, if the job is in waiting in

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-22 Thread Björn Grüning
ccessfully. So the question is , it seems not all the tools can be submitted via torque (or other resource manager), right? 王渭巍 From: Björn Grüning Date: 2014-07-21 01:23 To: 王渭巍; Björn Grüning; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, sorry but we d

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-22 Thread 王渭巍
34 > To: 王渭巍; Thomas Bellembois; galaxy-dev > Subject: Re: [galaxy-dev] How to configure galaxy with a cluster > Hi Ben, > > that is not possible at the moment. The idea is to keep the > user-inferface as easy as possible for the user. You, as admin, can > decide which resource a speci

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-20 Thread Björn Grüning
7-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster You can set up your instan

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread 王渭巍
Ben From: Björn Grüning Date: 2014-07-16 16:34 To: 王渭巍; Thomas Bellembois; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, that is not possible at the moment. The idea is to keep the user-inferface as easy as possible for the user. You, as admin, can decide

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread Björn Grüning
2014-07-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster You can set up your instance

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread Ross
8 > 128 > > > > > > > > and still no cluster options in "megablast" item. How can I see cluster > options in the page, for example, the page will let me choose to use local > server or a cluster. > > Ben > > > > *From:* Thomas Belle

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread Thomas Bellembois
t; > > > > > > and still no cluster options in "megablast" item. How can I see cluster > options in the page, for example, the page will let me choose to use local > server or a cluster. > > Ben > > > > From: Thomas Bellemboi

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread 王渭巍
options in "megablast" item. How can I see cluster options in the page, for example, the page will let me choose to use local server or a cluster. Ben From: Thomas Bellembois Date: 2014-07-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How to configure gal

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-15 Thread Thomas Bellembois
Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster You can set up your instance to use your cluster by default for all jobs or only for specific jobs. Here is a part of my job_conf.xml f

[galaxy-dev] How to configure galaxy with a cluster

2014-07-15 Thread 王渭巍
Hello, everyone, I am new here, and I am trying to configure galaxy with a cluster. I have 3 servers. One for galaxy server, two for cluster computing. And I followed "Running Galaxy Tools on a Cluster" done the configuration. Now I have 2 questions: 1. How to ve