Re: [galaxy-dev] How to remove a broken toolshed install

2012-10-29 Thread Clare Sloggett
Hi Greg, > We had some occasions where we'd try to install a tool from the > toolshed, and it would hang - it appeared that the hg pull was timing > out. > > Was the timeout a regular occurrence? if so, do you know that cause, and > were you able to get it resolved? > It was repeated, but after a

Re: [galaxy-dev] How to remove a broken toolshed install

2012-10-17 Thread Greg Von Kuster
Hello Clare, On Oct 17, 2012, at 2:22 AM, Clare Sloggett wrote: > Actually, the reason I did this was because I didn't know how to solve > a different problem, so maybe I should ask you about that one as well. > > We had some occasions where we'd try to install a tool from the > toolshed, and i

Re: [galaxy-dev] How to remove a broken toolshed install

2012-10-16 Thread Clare Sloggett
Hi Greg, Thanks for this! On 17 October 2012 01:17, Greg Von Kuster wrote: >> I managed to break a toolshed-installed tool by fiddling with the >> files under shed_tools. > > As you've discovered, this is not a good thing to try. Always use the Galaxy > interface features to perform tasks lik

Re: [galaxy-dev] How to remove a broken toolshed install

2012-10-16 Thread Greg Von Kuster
Hello Clare, On Oct 16, 2012, at 1:02 AM, Clare Sloggett wrote: > Hi all, > > I managed to break a toolshed-installed tool by fiddling with the > files under shed_tools. As you've discovered, this is not a good thing to try. Always use the Galaxy interface features to perform tasks like this

[galaxy-dev] How to remove a broken toolshed install

2012-10-15 Thread Clare Sloggett
Hi all, I managed to break a toolshed-installed tool by fiddling with the files under shed_tools. This led to a situation in which the Galaxy admin interface claims the tool is still installed, but can't find any files for it. I manually put the repository files where I think they should go, but t