Not sure if this question or solution has passed this list already but couldn't
find anything in the archive.
Is it possible to somehow insert separator lines between groups of for instance
bowtie2 indexes?
One of our tool displays it like below (the ----- lines); I would like to add
separators but as below is ugly but working. Tried to make them boldface but
doesn't work. I now linked an almost empty index.
At best the checkmark should not show up also. Could this be done somehow from
the bowtie2.loc file?
This becomes extreme handy when you have a large collection of indexes.
Alex
This code in the tool xml loads the index;
<param name="bowtieindexes2" type="select" label="Select genome sets for
alignment" help="" display="checkboxes" multiple="True" >
<options from_data_table="bowtie2_indexes">
<column name="name" index="2"/>
<column name="value" index="3"/>
<validator type="no_options" message="No indexes are available" />
</options>
</param>
And shows up in the tool like;
Example:
----------------- Mammals -----------------
Bos taurus ensembl 4.0.61
Homo sapiens ensembl GRch37
Macaca mulatta (rhesus monkey draft NCBI)
Etc etc
----------------- Other Eukaryotes -----------------
Musquito aedes_aegypti draft
Saccaromyces cerevisiae
Etc etc etc etc
----------------- Prokaryotes -----------------
E coli refseq U00096
Etc etc etc
Waddlia chondrophila strain 2032/99 draft jan2014
Waddlia chondrophila WSU86-1044 chrom
Waddlia chondrophila WSU86-1044 plasmid
----------------- Contaminants -----------------
Common NGS adpaters
UniVec vector DB
PhiX (internal NGS control)
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