*From: *Joachim Jacob mailto:joachim.ja...@vib.be>>
*Date: *January 8, 2013 11:06:17 AM EST
*To: *Greg Von Kuster mailto:g...@bx.psu.edu>>
*Subject: **Re: [galaxy-dev] Installing dependencies from toolshed
fails and produces strange folder*
*Reply-To: *joachim.ja...@vib.be <mailto:jo
om: *Joachim Jacob mailto:joachim.ja...@vib.be>>
*Date: *January 8, 2013 11:06:17 AM EST
*To: *Greg Von Kuster mailto:g...@bx.psu.edu>>
*Subject: **Re: [galaxy-dev] Installing dependencies from toolshed
fails and produces strange folder*
*Reply-To: *joachim.ja...@vib.be <mailto:joachi
.@bx.psu.edu>>
*Subject: **Re: [galaxy-dev] Installing dependencies from toolshed
fails and produces strange folder*
*Reply-To: *joachim.ja...@vib.be <mailto:joachim.ja...@vib.be>
Thanks. And where is the JAVA_JAR_PATH set?
Joachim
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde
Tel
Hello Joachim,
Tool dependencies are installed into the location defined by the following
entry in your universe_wsgi.ini file.
# Path to the directory in which managed tool dependencies are placed. To use
# the dependency system, see the documentation at:
# http://wiki.g2.bx.psu.edu/Admin/Conf
Hi all,
Updating our Galaxy: the migration of some tools to the toolshed (let's
take picard as an example) and installing them back from the toolshed
worked well.
However, during the update, I forgot to install the dependencies.
So I went to the administration part of our Galaxy, and selecte
Hi devs,
Got the following error when trying to test the install of a dependency:
URL:
http://bioinf-galaxy/admin_toolshed/manage_tool_dependencies?sort=-create_ti
me&show_item_checkboxes=false&async=false&page=1&webapp=galaxy&operation=ins
tall&id=00f52b22f3524111& Module paste.exceptions.error
