Subject: Re: [galaxy-dev] Looks like actual user breaks splitting
On Nov 4, 2011, at 8:03 PM, Chorny, Ilya wrote:
Looks like the mv is something I added and forgot about. I changed it to
shutil.copyfile and it works fine. This also has something to do with the
isilon. I pushed
: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Friday, November 04, 2011 4:50 PM
To: Nate Coraor (n...@bx.psu.edu)
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Looks like actual user breaks splitting
I am getting
, 2011 7:57 AM
To: Chorny, Ilya
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Looks like actual user breaks splitting
On Nov 4, 2011, at 8:03 PM, Chorny, Ilya wrote:
Looks like the mv is something I added and forgot about. I changed it to
shutil.copyfile and it works fine. This also has
: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Friday, November 04, 2011 4:50 PM
To: Nate Coraor (n...@bx.psu.edu)
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Looks like actual user breaks splitting
I am getting
I'm not following you - it's been 6 months since I wrote that code ;-}
IT looks to me like a DatasetPath() object is always placed in that array, and
with one exception near then, it looks like the change I made generates those
objects the same way.
Do you have a stack trace for the merge
Nate Coraor (n...@bx.psu.edu) wrote:
Duddy, John wrote:
I'm not following you - it's been 6 months since I wrote that code ;-}
I know the feeling!
IT looks to me like a DatasetPath() object is always placed in that array,
and with one exception near then, it looks like the change I
Hey John,
Any thoughts?
Ilya
Traceback (most recent call last):
File /home/galaxy/ichorny/galaxy-central/lib/galaxy/jobs/runners/tasks.py,
line 73, in run_job
tasks = splitter.do_split(job_wrapper)
File
/home/galaxy/ichorny/galaxy-central/lib/galaxy/jobs/splitters/multi.py, line
73,
The datatype you are using does not define a split method. Are you working with
our in-progress gz type or fastqillumina?
John Duddy
Sr. Staff Software Engineer
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Tel: 858-736-3584
E-mail: jdu...@illumina.commailto:jdu...@illumina.com
I'll submit a pull request shortly...
John Duddy
Sr. Staff Software Engineer
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Tel: 858-736-3584
E-mail: jdu...@illumina.com
-Original Message-
From: Nate Coraor (n...@bx.psu.edu) [mailto:n...@bx.psu.edu]
Sent: Wednesday,
