Gus,
Good to hear about your progress. Please send me a patch of your changes and
I'll take a look. You can create a patch using Mercurial from the command line
as follows.
% hg diff > tophat.patch
Thanks,
J.
On Jul 13, 2011, at 7:37 PM, W. Augustine Dunn III wrote:
> First off thank you hea
First off thank you heartily for pointing me in the right direction here.
It SEEMS like i have managed to accomplish this. Meaning: i finally got the
run to get past the parsing of the config file and now have a process
running on the cpu and the server log shows a command line string that
matche
> I recommend to use the repeat tag (see
> http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax) around the
> existing parameter to make it possible to select multiple files.
Sarah's suggestion is spot on. See the Cuffcompare wrapper for an example of
how to use this tag.
Gus, if you e
Hi Gus,
for parameters of the type "select" you can enable the option to select
multiple options. However, this isn't really suitable for files, I think.
I recommend to use the repeat tag (see
http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax) around the
existing parameter to make
I want to customize the tophat and related interfaces to allow more than one
fastq file per fwd/rev set as is allowed and very helpful in the CLI
version:
$ tophat -o output -p 8 -r 125 -G annotation.gtf myBowtieIndex
run1_fwd.fastq,run2_fwd.fastq run1_rev.fastq,run2_rev.fastq
Is there a way to se
