Re: [galaxy-dev] Output Excel file

2014-09-09 Thread Patrick Leyshock
Bjorn, that did the trick, thank you for the suggestion. Onwards! Patrick On Thu, Sep 4, 2014 at 2:41 PM, Björn Grüning bjoern.gruen...@gmail.com wrote: Hi Patrick, a nice workaround is the following: Please create your file.xls file, but not in the path galaxy will provide, use a

Re: [galaxy-dev] Output Excel file

2014-09-08 Thread Patrick Leyshock
Bjorn, that did the trick, thank you for the suggestion. Onwards! On Thu, Sep 4, 2014 at 2:41 PM, Björn Grüning bjoern.gruen...@gmail.com wrote: Hi Patrick, a nice workaround is the following: Please create your file.xls file, but not in the path galaxy will provide, use a temporary path,

[galaxy-dev] Output Excel file

2014-09-04 Thread Patrick Leyshock
Hello, I am trying to write a Galaxy tool that will output an Excel file. Currently the tool wrapper calls an R script, which uses the xlsx package to read and write to and from Excel files. After being invoked by Galaxy, the script is able to successfully read an input Excel file:

Re: [galaxy-dev] Output Excel file

2014-09-04 Thread Björn Grüning
Hi Patrick, a nice workaround is the following: Please create your file.xls file, but not in the path galaxy will provide, use a temporary path, for example in the current working dir in your wrapper. Than after your program has finished, just move the *.xls file to the galaxy output path.