emant
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Problem related to a job that "failed"
On May 11, 2012, at 3:39 PM, Kelkar, Hemant wrote:
> All,
>
> This question pertains to a local galaxy install where the jobs are being
> submitted to a cluster running LSF.
>
ter" as you had suggested
first to see if we can avoid the "failed" job problem altogether.
Thanks again.
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Friday, May 11, 2012 4:20 PM
To: Kelkar, Hemant
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy
On May 11, 2012, at 4:18 PM, Kelkar, Hemant wrote:
> No I did not execute it on the "galaxy" server. I do not have shell access to
> the blade that actually runs the galaxy server.
> So I would need to get my sys admin to run this then?
Not necessarily, as long as you are running it as the same
No I did not execute it on the "galaxy" server. I do not have shell access to
the blade that actually runs the galaxy server.
So I would need to get my sys admin to run this then?
>That's pretty odd, you're executing this on the Galaxy server? What happens
>if you run fetch_eggs.py in the sam
ou run fetch_eggs.py in the same directory?
--nate
>
>
>
> -Original Message-
> From: Nate Coraor [mailto:n...@bx.psu.edu]
> Sent: Friday, May 11, 2012 3:54 PM
> To: Kelkar, Hemant
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] Problem related
)
galaxy.eggs.EggNotFetchable: ['Cheetah']
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Friday, May 11, 2012 3:54 PM
To: Kelkar, Hemant
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Problem related to a job that "failed"
On May 11,
On May 11, 2012, at 3:39 PM, Kelkar, Hemant wrote:
> All,
>
> This question pertains to a local galaxy install where the jobs are being
> submitted to a cluster running LSF.
>
> I periodically get an error from a galaxy job (“Job output not returned from
> cluster”) even though the job comp
All,
This question pertains to a local galaxy install where the jobs are being
submitted to a cluster running LSF.
I periodically get an error from a galaxy job ("Job output not returned from
cluster") even though the job completes properly on the cluster. In researching
this issue our syst
