Hello Björn,
I've enhanced the error message displayed in 12959:64d677b1e16a, which is
available in the next-stable branch, so it will be included in the upcoming
release. This message is tricky, because it is only displayed when visiting
the Tool Shed from Galaxy to install a repository that
Hi JanakiRam,
galaxy-dist is the stable version of Galaxy and galaxy-central is the
development version. But you can also track galaxy-central and the
stable branch as I do. Galaxy-central [stable] should be the same as
galaxy-dist in theory. In practise galaxy-central [stable] get more
fixes
Hi Greg/Bjoern,
Thanks for all your help. I checkout the galaxy-central code
base(previously I am using galaxy-dist code base) and uploaded my custom
tool(with both tool and repository dependency) in to toolshed and also
installed custom tool from galaxy. The dependency tool also installed
success
Hi,
thanks for fixing it Greg. Would it also be possible to get a more
concrete error message in such cases where the
repository_dependencies.xml file is somehow broken?
Thanks,
Bjoern
Am 03.04.2014 16:22, schrieb Greg Von Kuster:
I should have handled the import in the same commit, but did
I should have handled the import in the same commit, but did so in the
following changeset. It will eliminate the problematic
prior_installation_required="False" attribute from the tag when a
capsule is being imported.
changeset: 12944:59bd7349a128
tag: tip
user:greg
date:
Thanks Greg, I will verify with new changes.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 7:05 PM, Greg Von Kuster wrote:
> Hello Janaki and Björn,
>
> This problematic behavior is a result of a bug in the repository export
> process which has been fixed in the following changeset which is curren
Hello Janaki and Björn,
This problematic behavior is a result of a bug in the repository export process
which has been fixed in the following changeset which is currently available in
the Galaxy central repo. Thanks very much for reporting this.
https://bitbucket.org/galaxy/galaxy-central/comm
Yes, if that is the behavior, that is definitely a bug. I'll take a look and
get back to you on this.
Thanks!
On Apr 3, 2014, at 7:35 AM, Björn Grüning wrote:
> Hi JanakiRam,
>
> I will take Greg into CC. He is the main Tool Shed developer, maybe we
> spotted a bug in populating "prior_inst
Hi,
Bjoern, Yes the summary looks correct.
Greg, I have added tool_dependencies.xml to the same custom tool and
installed it successfully in my local galaxy. But If I add
repository_dependencies.xml to my custom tool and try to install the tool,
then galaxy showing an error message that the dep
Hi JanakiRam,
I will take Greg into CC. He is the main Tool Shed developer, maybe we
spotted a bug in populating "prior_installation_required" in
repository_dependencies.xml file. He probably knows if that is supposed
to work.
Greg, to summarize our findings. It seems that if JanakiRam uploa
Hi,
I am using latest checkout from
https://bitbucket.org/galaxy/galaxy-dist/(Just now I also updated my
local galaxy code base). Yes, without
repository dependency everything working fine.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 3:39 PM, Björn Grüning wrote:
> Hi,
>
> I just tested it in t
Hi,
I just tested it in the test-toolshed and for me
'prior_installation_required' is not inserted. Which Galaxy version do
you use? Please note, that I'm not sure if that is really causing the
trouble you have seen.
If you remove the repository dependency everything is working as expected?
Hi Bjoern,
Please see my comments inline.
On Thu, Apr 3, 2014 at 3:14 PM, Björn Grüning wrote:
> Hi Janaki,
>
> can you try to remove this prior_installation_required completely?
>
I didn't added 'prior_installation_required' in the
repository_dependencies.xml(as this is optional), it go
Hi Janaki,
can you try to remove this prior_installation_required completely?
Also why do you need a repository dependency, I think that is not needed or?
Cheers,
Bjoern
Am 03.04.2014 09:30, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern,
I also exported both the repositories from local toolshe
Hi Bjoern,
I also exported both the repositories from local toolshed. Please find the
attached files.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 12:50 PM, Janaki Rama Rao Gollapudi <
janakiram.gollap...@india.semanticbits.com> wrote:
> Hi,
>
> Thanks for quick reply. Please find the attached .t
Hi,
Thanks for quick reply. Please find the attached .tar file of both the
repositories.
Thanks,
JanakiRam
On Thu, Apr 3, 2014 at 12:45 PM, Björn Grüning wrote:
> This all seems to be fine, can you send me a tarball with both
> repositories ...
>
> Thanks,
> Bjoern
>
> Am 03.04.2014 09:05, sc
This all seems to be fine, can you send me a tarball with both
repositories ...
Thanks,
Bjoern
Am 03.04.2014 09:05, schrieb Janaki Rama Rao Gollapudi:
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gol
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks,
JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi <
janakiram.gollap...@india.semanticbits.com> wrote:
> Hi,
>
> I have implemented a custom tool called 'barcode-parse' and uploaded this
> custom to
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this
custom to into my local tool shed(which is running at http://localhost:9009).
Also able to install this custom tool from galaxy.
Then I have added simple repository dependency. I have created a xml file
'repository_depe
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