[galaxy-dev] Tool added / pb with output file

2012-07-16 Thread Sarah Maman
Hello, I have added a tool in my local instance to map BAM files on reference genome fasta file thanks to BWA. This tool runs, and the output file generated in database/files/000 is correct (not empty and good data inside) but the output listed in the history panel of Galaxy interface , is em

Re: [galaxy-dev] Tool added / pb with output file

2012-07-20 Thread Sarah Maman
Hello, My problem is solved. Here is a solution : my $output_galaxy = $ARGV[2]; . if (! -e "$output_perl_file") {print STDERR "no output file\n";} else {`(cp -a $output_perl_file $output_galaxy) >& ./error.log 2>&1`} And a