ag 12 november 2014 17:18
> *To:* Lukasse, Pieter
> *Cc:* galaxy-dev@lists.bx.psu.edu; Dave Bouvier
> *Subject:* Re: [galaxy-dev] Tool shed environment dependency - HOW TO
> do this?
>
> Yes, this is correct. Do you really need to compile it by yourself?
> This is really a pain,
googlemail.com>
[mailto:bjoern.gruen...@gmail.com <mailto:bjoern.gruen...@gmail.com>]
*Sent:* woensdag 12 november 2014 17:01
*To:* Lukasse, Pieter
*Cc:* galaxy-dev@lists.bx.psu.edu <mailto:galaxy-dev@lists.bx.psu.edu>;
Dave Bouvier
*Subject:* Re: [galaxy-dev] Tool shed environment dependency - HOW
]
Sent: woensdag 12 november 2014 17:18
To: Lukasse, Pieter
Cc: galaxy-dev@lists.bx.psu.edu; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Yes, this is correct. Do you really need to compile it by yourself? This is
really a pain, I tried it during the R2
cy:
>>
>> Ensures R 3.1.1 installation is triggered (via dependency).
>>
>> Ensures Bioconductor 3.0 and package metaMS, multtest and snow are
>> installed.
>>
>>
>>
>>
>>
>> Thanks,
>>
>> Pieter
>>
>>
Message-
From: Björn Grüning [mailto:bjoern.gruen...@gmail.com [1]]
Sent: donderdag 30 oktober 2014 11:25
To: galaxy-dev@lists.bx.psu.edu [2]; Lukasse, Pieter; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO
do
this?
Hi Pieter,
Am 30.10.2014 um 11:15 sc
erdag 6 november 2014 10:02
To: 'Björn Grüning'; galaxy-dev@lists.bx.psu.edu; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Hi Bjoern,
Thanks for this reply. I will have to try referring to the R_ROOT_DIR from
another tool_dependency.
4 11:25
To: galaxy-dev@lists.bx.psu.edu; Lukasse, Pieter; Dave Bouvier
Subject: Re: [galaxy-dev] Tool shed environment dependency - HOW TO do this?
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
> Hi,
>
> I have a Bioconductor package which depends on R 3.1.1 , so I think
Hi Pieter,
Am 30.10.2014 um 11:15 schrieb Lukasse, Pieter:
> Hi,
>
> I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
> use the "setup_r_environment" trick.
Why? Do you need a new release? The latest current release in the Tool
Shed is R 3.1.0. If this is not enough
Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot
use the "setup_r_environment" trick.
I already got a tool_dependency.xml working that installs R 3.1.1 and the
necessary Bioconductor packages using bioclite method (see attachment). Now my
question is:
*
