Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-22 Thread Tim Booth
Hi Devs, Just to let you know, I've nailed down my uploading issue to a reproducible test case which may be worth addressing if only by tweaking the notes in universe.wsgi.sample to be clearer. It was nothing to do with AJAX uploading in the end, and probably unrelated to the intermittent Chrome/

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-16 Thread sam guerler
Hi Tim, Were you able to fix your problem? Thanks, Sam On Fri, Oct 4, 2013 at 1:05 PM, Nate Coraor wrote: > Tim, > > Just to be certain, if you have AJAX upload enabled, you'll see this > message after you click Execute on the upload tool: > > http://www.bx.psu.edu/~nate/galaxy/ajax.png > >

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Nate Coraor
Tim, Just to be certain, if you have AJAX upload enabled, you'll see this message after you click Execute on the upload tool: http://www.bx.psu.edu/~nate/galaxy/ajax.png Whereas with it disabled, you'll see: http://www.bx.psu.edu/~nate/galaxy/noajax.png --nate On Oct 4, 2013, at 11:48 AM

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Tim Booth
Hi Sam, I just want to try and get a working Galaxy on Bio-Linux, and unless your new code is coming out imminently (ie. next week) I need to make progress before then. If I can't debug the problem I think I'm going to have to revert changes until I get to something that happens to work. The resu

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread sam guerler
Hey, We are currently refactoring and redesigning the front-end javascript code. If the bug you are observing is 1) related to specifics of the current front-end implementation and 2) if fixing the bug is time consuming it might be reasonable to not invest that time and wait until we complete the

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Tim Booth
Hi Guys, Thanks for the replies. In that case it looks like the problem with my DEB package is not the same as the transient upload issue with Chrome. I was indeed using Chrome for most of the testing, but if I try to use the DEB package I've made then uploads still don't work at all in either Ch

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Nate Coraor
On Oct 4, 2013, at 10:00 AM, John Chilton wrote: > I have seen this behavior too and I too have switched to Firefox, but > I have only ever seen this with chrome on localhost, never with chrome > on a remote server behind a proxy. I've seen this issue before as well, a few of us have worked on it

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread John Chilton
I have seen this behavior too and I too have switched to Firefox, but I have only ever seen this with chrome on localhost, never with chrome on a remote server behind a proxy. -John On Fri, Oct 4, 2013 at 8:55 AM, Carlos Borroto wrote: > On Fri, Oct 4, 2013 at 8:11 AM, Tim Booth wrote: >> When

Re: [galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Carlos Borroto
On Fri, Oct 4, 2013 at 8:11 AM, Tim Booth wrote: > When uploading a file, no job appears in the right-hand panel. If I > click refresh I might see a job but it stays in the blue "Dataset is > uploading" state forever. Hi Tim, It is great news to hear Galaxy deb packages could be a possibility i

[galaxy-dev] Uploads stalling on local Galaxy installation

2013-10-04 Thread Tim Booth
Hi All, Some of the developers will know me already but it's my first time being properly on this list as I'm now working concertedly on Galaxy. I'm responsible for Bio-Linux which currently ships with an out-of-date and slightly flakey galaxy, but I'm working to fix that. I've hit a problem. T