OK - I ran the "Reset all repository metadata" action on both
Tool Sheds - no errors reported.
Thanks,
Peter
On Wed, Jul 30, 2014 at 12:23 PM, Greg Von Kuster wrote:
> Yes, it looks like metadata just needs to be regenerated on the
> affected repositories. Let me know if doing so uncovers some
Both Galaxy Tool Sheds have been updated with this fix.
Greg
On Jul 30, 2014, at 7:14 AM, Peter Cock wrote:
> Thanks John - is there any point/benefit to re-uploading
> my tool once the fix is live on the Tool Shed?
>
> i.e. Was it a harmless warning?
>
> Peter
>
>
> On Wed, Jul 30, 2014 at
Yes, it looks like metadata just needs to be regenerated on the affected
repositories. Let me know if doing so uncovers something else.
Greg
On Jul 30, 2014, at 7:20 AM, John Chilton wrote:
> ... that might be a Greg question. The tool shed isn't going to use
> the citation information in any
... that might be a Greg question. The tool shed isn't going to use
the citation information in anyway at this time
(https://trello.com/c/R8vKH4PQ) - so you won't gain anything from a
citation-y perspective by re-uploading. That bug might have interfered
with the tool shed metadata generation proce
Thanks John - is there any point/benefit to re-uploading
my tool once the fix is live on the Tool Shed?
i.e. Was it a harmless warning?
Peter
On Wed, Jul 30, 2014 at 12:12 PM, John Chilton wrote:
> Hey Peter,
>
> Opps sorry about that and thanks for the bug report. The tool shed
> code should
Hey Peter,
Opps sorry about that and thanks for the bug report. The tool shed
code should be fixed with
https://bitbucket.org/galaxy/galaxy-central/commits/38ba45d6ba5be65b3b743fc08739e16cd6e0ac8f
- it is in next-stable so I think the tool shed should pick up that
fix at next tool shed update.
-J
Hi John,
Following the work at the BOSC 2014 CodeFest to support
embedded citations within Galaxy Tool XML files [1], and your
work adding this to the BLAST tools as an example [2], I tried
uploading a minor tool using this to the Tool Shed.
The upload seems to have worked, but there was a scary
