Re: [galaxy-dev] Variable multiple output files not appearing in history

2011-12-09 Thread Dannon Baker
Hi Graham, There was an issue with the dataset collection code that was preventing this sample wrapper from working. This has been fixed in 6426:187267753315, and the wrapper now functions properly for me, displaying all 5 files. Let me know if this works for you after you've updated. Thanks

Re: [galaxy-dev] Variable multiple output files not appearing in history

2011-12-06 Thread graham etherington (TSL)
Hi, Thanks for the input. I've attached code (tool xml and perl script tool) and a test file for a simple example that creates variable amounts of files after tool execution. The test file is a simple 4 line text file for which new file is created for each line in it and then that line is written t

Re: [galaxy-dev] Variable multiple output files not appearing in history

2011-12-05 Thread Geert Werk
Hi Graham, I've created something similar myself. I've not put it on the toolshed yet, as I have to test it further, but it seems to work as expected. See code in attachment. Best regards, geert vandeweyer University of Antwerp On 12/05/2011 12:47 PM, graham etherington (TSL) wrote: Hi, I

Re: [galaxy-dev] Variable multiple output files not appearing in history

2011-12-05 Thread Dannon Baker
Graham, How are the output files being handled in split_var_length_barcodes_wrapper.py? See http://wiki.g2.bx.psu.edu/Admin/Tools/Multiple%20Output%20Files for a reference-- you're going to want to follow the bottom example there involving $__new_file_path__ and the naming convention specified

[galaxy-dev] Variable multiple output files not appearing in history

2011-12-05 Thread graham etherington (TSL)
Hi, I'm developing a barcode splitter, which will split barcodes of variable length and then put them into the history for downstream analysis (currently FASTX barcode splitter only splits barcodes of the same length and the user has to download the data through an html link). The number of output