Re: [galaxy-dev] galaxy assumed linux shell

2013-02-03 Thread James Taylor
Command lines inside tool configs are assumed to be 'sh' (posix bourne shell). If you are extending one of the runners, definitely stick to pure 'sh'. However, once your command is run, there is no reason you can't use any shell of your choice. -- James Taylor, Assistant Professor, Biology/CS, E

[galaxy-dev] galaxy assumed linux shell

2013-02-03 Thread Hagai Cohen
Hi, There are couple of Linux shells: bash, sh, zsh, csh. etc I would like to know if Galaxy is written to be supported on a specific one or it is written to support any linux shell? I'm asking this, because I want to add some features and I want to know what shell should I support? Or should writ