Grüning; galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Dear there,
Could someone tell me why there is no Drosophila melanogaster : BDGP 5.74 in
the drop-down menu of SnpEff for local Galaxy?
In fact, I could find it (BDGP 5.74) in SnpEff Databases
xfw...@ku.edu]
Sent: Friday, April 11, 2014 5:52 PM
To: Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
I am sorry to bother again about this problem.
I would like to use Drosophila melanogaster : BDGP5.74. I did the two steps you
sugge
u.edu]
on behalf of Wang, Xiaofei [xfw...@ku.edu]
Sent: Thursday, April 03, 2014 3:52 PM
To: Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Oh, hooray, I figured it out.
what I did is to go to this folder /Users/pablocingolani/
[galaxy-dev-boun...@lists.bx.psu.edu]
on behalf of Wang, Xiaofei [xfw...@ku.edu]
Sent: Thursday, April 03, 2014 10:31 AM
To: Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
>1. click "SnpEff Download"
>2. choose one gen
s a lot!
>
> Best,
>
> Xiaofei
>
> From: Wang, Xiaofei
> Sent: Wednesday, April 02, 2014 11:21 AM
> To: Daniel Blankenberg
> Cc: Björn Grüning; galaxy-dev@lists.bx.psu.edu
> Subject: RE: [galaxy-dev] snpEff and FASTQ Su
@lists.bx.psu.edu
Subject: RE: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Oh, yes, here it is:
Traceback (most recent call last):
File
"/Users/xiaofeiwang/softwares/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/9b7b4e0ca9db/fastq_stats/fastq_stats.py",
line 48,
es/galaxy-dist/tool-data/snpEff/data
From: Björn Grüning [bjoern.gruen...@gmail.com]
Sent: Thursday, April 03, 2014 5:25 AM
To: Wang, Xiaofei; Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Am 03.04.2014 04:34, schrieb Wang
Why the snpEff data
manager has been there last time?
Thank you so much!
Best,
Xiaofei
From: Björn Grüning [bjoern.gruen...@gmail.com]
Sent: Wednesday, April 02, 2014 4:17 PM
To: Wang, Xiaofei; Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [
Dear there,
When I used SnpEff in local galaxy instance, I got an error:
Exception in thread "main" java.lang.UnsupportedClassVersionError:
ca/mcgill/mcb/pcingola/snpSift/SnpSift : Unsupported major.minor version 51.0
at java.lang.ClassLoader.defineClass1(Native Method) at
java.lang.ClassLoader
[bjoern.gruen...@gmail.com]
Sent: Wednesday, April 02, 2014 4:17 PM
To: Wang, Xiaofei; Björn Grüning; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Hi Xiaofei,
> Dear Bjoern,
> As your suggestion, I tried to install the snpEff annotation. But
_
* From: Björn Grüning [bjoern.gruen...@gmail.com]
* Sent: Wednesday, April 02, 2014 12:55 PM
* To: Wang, Xiaofei; Björn Grüning; galaxy-dev@lists.bx.psu.edu
* Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
*
* Hi,
*
* that means that th
*
*
*
*
* From: Björn Grüning [bjoern.gruen...@gmail.com]
* Sent: Wednesday, April 02, 2014 12:55 PM
* To: Wang, Xiaofei; Björn Grüning; galaxy-dev@lists.bx.psu.edu
* Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics err
x.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Hi Xiaofei,
Dear there,
When I used SnpEff in local galaxy instance, I got an error:
Exception in thread "main" java.lang.UnsupportedClassVersionError:
ca/mcgill/mcb/pcingola/snpSift/SnpSift :
27;*.genome' not found? )
Human (hg37)
Mouse (mm37.61)
From: Björn Grüning [bjoern.gruen...@gmail.com]
Sent: Wednesday, April 02, 2014 10:35 AM
To: Wang, Xiaofei; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev]
I ask a question
> about this? Is it required rpy for FASTQ Summary Statistics or CloundMap?
>
> Thanks a lot!
>
> From: Björn Grüning [bjoern.gruen...@gmail.com]
> Sent: Wednesday, April 02, 2014 10:35 AM
> To: Wang, Xiaofei; ga
ired rpy for FASTQ Summary Statistics or CloundMap?
>
> Thanks a lot!
>
> From: Björn Grüning [bjoern.gruen...@gmail.com]
> Sent: Wednesday, April 02, 2014 10:35 AM
> To: Wang, Xiaofei; galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] snpEff and FAST
___
From: Björn Grüning [bjoern.gruen...@gmail.com]
Sent: Wednesday, April 02, 2014 10:35 AM
To: Wang, Xiaofei; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] snpEff and FASTQ Summary Statistics errors
Hi Xiaofei,
> Dear there,
>
> When I used SnpEff in local galaxy instanc
Hi Xiaofei,
Dear there,
When I used SnpEff in local galaxy instance, I got an error:
Exception in thread "main" java.lang.UnsupportedClassVersionError:
ca/mcgill/mcb/pcingola/snpSift/SnpSift : Unsupported major.minor version 51.0 at
java.lang.ClassLoader.defineClass1(Native Method) at
java.l
Dear there,
When I used SnpEff in local galaxy instance, I got an error:
Exception in thread "main" java.lang.UnsupportedClassVersionError:
ca/mcgill/mcb/pcingola/snpSift/SnpSift : Unsupported major.minor version 51.0
at java.lang.ClassLoader.defineClass1(Native Method) at
java.lang.ClassLoader
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