Re: [galaxy-dev] wigTobigwig error: broken pipe and len file not found

2013-11-19 Thread ruiwang.sz
Hi Nate, Thanks for the note! So may I ask whether this is expected? I mean, the len_file_path points to tool-data/..., which is right inside galaxy-dist, and it is natural. I didn't realize that this path is relative to the individual job working dir. Are there any other similar cases? Best,

Re: [galaxy-dev] wigTobigwig error: broken pipe and len file not found

2013-11-18 Thread Nate Coraor
On Sat, Nov 16, 2013 at 12:27 PM, ruiwang.sz ruiwang...@gmail.com wrote: Hi All, I‘m seeing some weird error messages...I googled but didn't see anything useful: So, it is during the wigToBigwig conversion: Dataset generation errors Dataset 47: Wig/BedGraph-to-bigWig on data 43 Tool

[galaxy-dev] wigTobigwig error: broken pipe and len file not found

2013-11-16 Thread ruiwang.sz
Hi All, I‘m seeing some weird error messages...I googled but didn't see anything useful: So, it is during the wigToBigwig conversion: Dataset generation errors Dataset 47: Wig/BedGraph-to-bigWig on data 43 Tool execution generated the following error message: grep: writing output: Broken