Re: [galaxy-dev] workflow intermediate files hog memory

2013-02-07 Thread mark.rose
ists.bx.psu.edu Subject: Re: [galaxy-dev] workflow intermediate files hog memory Hey Mark, Galaxy by default saves everything, as you've noticed. In workflows, you can flag outputs after which intermediate (unflagged) steps will be 'hidden' in the history, but you can't aut

Re: [galaxy-dev] workflow intermediate files hog memory

2013-02-06 Thread Dannon Baker
Hey Mark, Galaxy by default saves everything, as you've noticed. In workflows, you can flag outputs after which intermediate (unflagged) steps will be 'hidden' in the history, but you can't automatically delete them, though this is something we've wanted to do for a while. Unfortunately it re

[galaxy-dev] workflow intermediate files hog memory

2013-02-06 Thread mark.rose
Hi All Intermediate files in a workflow often make up the large majority of a workflow's output and, when this is an NGS analysis, this volume can be HUGE. This is a considerable concern for me as we consider implementing a local install of galaxy. Storing all of this seems useless (once wor