Hi Glen,
All is clear now. Thanks for the info! :)
K.
> the job should copy its output files into the Galaxy database/files directory
> before it terminates. So assuming you are not using data staging and the
> database directory is shared via NFS, then the next tool will read the files
> f
On Mar 30, 2011, at 8:34 AM, Kostas Karasavvas wrote:
> Hi Glen,
>
>>> Good to know. I assume that currently that is not happening though,
>>> right? If yes, is it in your immediate plans?
>>
>>
>> It should happen now - each step in the workflow would get submitted as a
>> separate job to th
Hi Glen,
>> Good to know. I assume that currently that is not happening though,
>> right? If yes, is it in your immediate plans?
>
>
> It should happen now - each step in the workflow would get submitted as a
> separate job to the cluster. At that point it is up to the job scheduler and
> not G
On Mar 30, 2011, at 6:01 AM, Kostas Karasavvas wrote:
> Thank you Dannon!
>
>> As far as where the jobs will run, it is definitely possible that multiple
>> jobs in a single workflow will execute on different nodes.
>
> Good to know. I assume that currently that is not happening though,
> righ
Thank you Dannon!
> As far as where the jobs will run, it is definitely possible that multiple
> jobs in a single workflow will execute on different nodes.
Good to know. I assume that currently that is not happening though,
right? If yes, is it in your immediate plans?
Cheers,
Kostas
__
Hi Kostas,
Workflows are saved in the database. If you're looking for an external
representation you can generate one by going to 'Download or Export' in an
individual workflow's menu in the main workflows list. The download option
there gives a JSON representation of the workflow that can al
Hi all!
I have two questions:
1) Where are workflows saved in the filesystem? Are they saved as xml
files (or something) that describes the structure of the
workflow/pipeline? (e.g. tools to run, parameters, etc.)
2) When a cluster is used, does a complete workflow run on one node or
is it possi
