[galaxy-dev] Adding a new web-service or perhaps a "webapp" to Galaxy

Hi, In one of my tools I generate a HTML report which I would like to enhance with some ajax functionality. I would like the possibility to do some backend computations based on the ajax requests. My question is: is there an easy way to add a new web-service to my Galaxy server? The web-servic

Re: [galaxy-dev] Adding a new web-service or perhaps a "webapp" to Galaxy

I could add a new file to /lib/galaxy/webapps/galaxy/controllers/ ...is that a good way to do it? From: galaxy-dev [mailto:galaxy-dev-boun...@lists.galaxyproject.org] On Behalf Of Lukasse, Pieter Sent: vrijdag 9 januari 2015 13:28 To: galaxy-...@lists.bx.psu.edu Subject: [galaxy-dev] Adding a

[galaxy-dev] FW: Adding a new web-service or perhaps a "webapp" to Galaxy

Meanwhile I added a new file indeed to /lib/galaxy/webapps/galaxy/controllers/ and this works for me. If there is a better/easier/standard way of doing this, please let me know! Attached my file as example. Best regards, Pieter From: galaxy-dev [mailto:galaxy-dev-boun...@lists.galaxyproject.o

[galaxy-dev] galaxy-central and nginx

Hi all, I’m testing the latest galaxy-central (rev 15961:63d901ca0e6e) to try out dataset collections. First thing I run into is that things don’t seem to run well when running it on a VM (port forwarded) with nginx. If I click on tools I get a white screen instead of tool options, and the log

Re: [galaxy-dev] Galaxy Bioblend option for importing dataset into a library?

Hi Damion, I finally got to implement this, see method copy_from_dataset() in this commit: https://github.com/afgane/bioblend/commit/bc6b7cb71abb25aa109b85b1ff24e73aadac5ce4 Best, Nicola Il 06.10.2014 17:59 Nicola Soranzo ha scritto: Il giorno gio, 02/10/2014 alle 16.50 -0700, Dooley, Damion ha

[galaxy-dev] Tool Development DELLY

Hello Galaxy, I'm currently working on adding some tools and am having an issue with DELLY. So, I am under the impression that BAM indexing happens automatically when a BAM is uploaded. However there is no associated dataset_i.dat.bai file in the file location in my local instance of galaxy. The

Re: [galaxy-dev] Tool Development DELLY

On Thu, Jan 8, 2015 at 6:11 PM, Marco Albuquerque wrote: > Hello Galaxy, > > I'm currently working on adding some tools and am having an issue with > DELLY. > > So, I am under the impression that BAM indexing happens automatically when a > BAM is uploaded. However there is no associated dataset_i.