Dear all
I have installed Galaxy in local and I want to set a file download link in
galaxy help. I want the user to download a small data-set from the help
with a link. However, the general HTML download syntax does not take
effect, look the figure I set.
Anyone knows how to set the download lin
Ugh - hit send too soon accidentally.
I was trying to say - that I believe this was recently changed to
allow Galaxy served over HTTPS to access the UCSC in the linked
changeset. I was wondering if you could try to just undo that change
and see if things work for you again.
https://bitbucket.org/
Hello Anna,
Can you try something for me -
https://bitbucket.org/galaxy/galaxy-central/commits/579d211c2b0fa8ef4195930cb999edbb9a0cf8eb
On Mon, Jan 19, 2015 at 9:12 AM, Anna Terry wrote:
> Update,
> Looking at the browser developer tools error logs in firefox I can see the
> following error:
>
I think introducing a new a type like mutect.fasa or something is
probably the better idea here. You can create a tool that creates this
datatype and your main mutect tool wrapper can then take an input of
type wrote:
> Hello Galaxy,
>
> I have a small dilemma regarding the fasta datatype.
>
> Cur
Hello all,
This was the likely week for a GalaxyAdmins meetup. However, only 11
people have filled out the Doodle poll to indicate what times work best for
them. So, we are postponing until the 3rd week of February.
If you haven't yet filled out the GalaxyAdmins poll,
http://doodle.com/dq3bexyu
Just to summarize what I found about getting tool parameter going again (though a future expansion of dataset
parameters to handle this would be great, esp. if one can specify a particular
data library):
1) Aysam's patch (thanks!)
2) Tool_form.mako has a hardcoded url that doesn't work for gala
Hello Galaxy,
I have a small dilemma regarding the fasta datatype.
Currently, to my knowledge, the fasta datatype does not specify any
metadata. I was curious how I should go about changing the fasta datatype if
I wanted to include the .fai and .dict as metadata? Basically I want to
avoid unneces
Hi Evan,
Am 19.01.2015 um 17:43 schrieb Evan Bollig PhD:
> Hey Bjoern,
>
> I'm playing with your docker recipes
> (https://github.com/bgruening/docker-recipes) today and I've been
> waiting for the galaxyp image build to complete for about 3 hours. For
> the majority of that time it has been stuc
Hey Bjoern,
I'm playing with your docker recipes
(https://github.com/bgruening/docker-recipes) today and I've been
waiting for the galaxyp image build to complete for about 3 hours. For
the majority of that time it has been stuck on
RUN install-repository "--url http://testtoolshed.g2.bx.psu.edu/
Hello gents,
Once again I would like to convey my most sincere appreciation for your help!!!
And yes I would like to hear your elaboration on my DRMAA runner which is what
I'm using.
So my installation looks like: galaxy --> pbs_drmaa --> torque
Cordialement / Regards,
Edgar Fernandez
-Mes
Update,
Looking at the browser developer tools error logs in firefox I can see the
following error:
Blocked loading mixed active content "
http://galaxy.hpc.qmul.ac.uk/tool_runner";
similar error in chrome:
(index):1 The page at 'https://galaxy.hpc.qmul.ac.uk/' was loaded over
HTTPS, but displaye
Yes. I figured out. Nothing wrong with the latest galaxy. I installed and
tested the galaxy server on a remote host. I connected to
the remote machine with X11 forwarding and started the firefox on the
remote machine. I didn't realize somehow firefox actually
ran on my local machine and hence when
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