Re: [galaxy-dev] Tool Testing: field inputs that occur inside repeat tag - resolved

2015-02-28 Thread John Chilton
Glad you got it working! Tests that use tool data tables should work in planemo - however you will need to configure the data table for the tool though. Here is an example of the how to setup a test data for a tool data table: https://github.com/jmchilton/picard/commit/4df8974384081ee1bb0f97e1bb8

[galaxy-dev] RFC: new param attribute for Galaxy tool XML

2015-02-28 Thread Björn Grüning
Hi all, we are planning to work on a project to implement a Galaxy fuse based shell. Probably starting with the work from Clare [1]. Next to our Galaxy IPython integration it should attract more bioinformaticians and should offer a new way to interact with Galaxy. This includes moving, deleting d

Re: [galaxy-dev] Tool Testing: field inputs that occur inside repeat tag - resolved

2015-02-28 Thread Peter Cock
On Fri, Feb 27, 2015 at 10:36 PM, Dooley, Damion wrote: > Yay, with your tip, galaxy direct tests now work with tool_conf.xml AND data > table in place! > > Galaxy DOC person: please update > https://wiki.galaxyproject.org/Admin/RunningTests > to state that tool_conf.xml.sample is NOT used for t